Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8 120 4e-22 seq59 107 2e-18 seq27 107 2e-18 seq2 107 2e-18 seq4 98.7 1e-15 seq161 91.5 2e-13 >seq8 Length=3569224 Score = 120 bits (132), Expect = 4e-22 Identities = 303/451 (67%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || || || ||| || || ||| ||||| || || || Sbjct 616287 TCAAAGCGTCCAGGCCTCAGCAGTGCAGAGTCGAGAATGTCAGCACGGTTAGTAGCTGCA 616346 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || || | ||||||||| | |||||||||||||| |||||||| |||||||| | | Sbjct 616347 ATTACTATGATGCCCGTATTTCCTTCAAAGCCATCCATTTCAGTCAAAAGTTGATTAAGG 616406 Query 14186 GTTTGTTCGCGTTCATCATT--CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243 || ||||| ||||||||||| | | || | |||| | | ||| | || || | Sbjct 616407 GTCTGTTCCCGTTCATCATTTCCTCCTCCAATC--CCCGTTCCTCTTTGTCTTCCAACAG 616464 Query 14244 CGTCAATTTCATCGATGAAAACGATACA-TGGTTGATTTTCACGGGCAACTTCAAAGATA 14302 | || || ||||| | ||| || || || || | | | | || | ||| ||| | | Sbjct 616465 CATCGATCTCATCAACGAACACAATGCACGGGGCGTTCTCCTTGGCCTTCTTGAAA-AGA 616523 Query 14303 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACAT 14362 || || |||| | ||||| ||||| |||||||| || ||||| | | ||||| || Sbjct 616524 TCACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCGGAA-AT 616582 Query 14363 TG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 14421 | || || || ||| | ||||||||||| || ||| || | |||||||| || Sbjct 616583 CGAGAAAAATGGAACGCCGGCCTCACCCGCGATCGCCTTGGCTAGCAAAGTCTTCCCAGT 616642 Query 14422 CCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAAAGTAGC 14480 || || ||| ||||| |||| ||||| | ||||| |||| | | | | Sbjct 616643 TCCAGGAGGGCCTATAAGAAGAACACCTTTCGGGATGCGTGCACCTACTG-CGGTGAATC 616701 Query 14481 GTTCAGGTTGTTTAAGGAAGTCCACGATTTC 14511 || |||| ||| ||||| || |||| ||| Sbjct 616702 TCTCGGGTTTTTTCAGGAACTCAACGACTTC 616732 >seq59 Length=1347071 Score = 107 bits (118), Expect = 2e-18 Identities = 190/273 (70%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| || || || |||||||| || || || || ||||| || || Sbjct 1070966 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCGGGCATAAGCCC 1071025 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || || |||| ||| || ||||| || || ||||| ||||||||||| || ||||| || Sbjct 1071026 GCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCA 1071085 Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 130205 || || || | |||||| || || |||| || || | |||| ||||| | || Sbjct 1071086 AGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCAC-ACGATTCAATCCACTCGAGCG 1071144 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCT 130262 |||||| || || ||| ||||||||| || | |||||| |||| || ||| Sbjct 1071145 CCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCT 1071204 Query 130263 TCTTTTCTGATGGATCTTTGATGTACTTATCTA 130295 ||| || || |||||||| || | |||| Sbjct 1071205 TCTCGTCGGA---GTCTTTGATATAAGTTTCTA 1071234 >seq27 Length=2003651 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| || || || ||||| || || || || || ||||| ||||| Sbjct 1228670 GTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGGGCATAAGACC 1228729 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || || |||| |||||| |||||||| || ||||| ||||||||||| || || || || Sbjct 1228730 ACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGCCTTCTACGCA 1228789 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || ||||| | ||| || || || || || | || |||| |||| || ||| Sbjct 1228790 AGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGATTCAATCCACCGCAGCGC 1228849 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||||| || || | | ||| ||||| || | |||||| Sbjct 1228850 CCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCGC 1228891 >seq2 Length=5918456 Score = 107 bits (118), Expect = 2e-18 Identities = 186/265 (70%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| || || || |||||||| || | | || || ||||| || || || || | Sbjct 905390 CCTCGTCGCGAGAAATTAGTTCATTGGAAATGTG-AGGCCGGGCATAAGCCCGCGTTTTT 905332 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| ||| || ||||| || || ||||| ||||||||||| || ||||| || || || | Sbjct 905331 TCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAG 905272 Query 130155 CAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 | | |||||| || || |||| || || | |||| ||||| | |||||||| Sbjct 905271 CGACGAGACGATCCGCGAAAGAAGAATCAC-ACGATTCAATCCACTCGAGCGCCCACTTG 905213 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTTCTTTTCT 130270 || || ||| ||||||||| || | |||||| |||| || |||||| || Sbjct 905212 GCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTCGTCG 905153 Query 130271 GATGGATCTTTGATGTACTTATCTA 130295 || ||||||||| || | |||| Sbjct 905152 GA---ATCTTTGATATAAGTTTCTA 905131 >seq4 Length=5414181 Score = 98.7 bits (108), Expect = 1e-15 Identities = 296/450 (66%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || | || |||||| || ||| ||||| || || || Sbjct 2885463 TCAAAGCGTCCCGGCCTCAGCAATGCAGAGTCAAGAATGTCAGCACGGTTAGTAGCTGCA 2885522 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || || | || ||||| | || ||||||||||| |||||||| |||||||| | | Sbjct 2885523 ATTACTATGACACCCGTATTTCCTTCGAAGCCATCCATTTCAGTCAAAAGTTGATTAAGG 2885582 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGG 14243 || ||||| | ||||||||| | | | | | || || | | ||| | || || | Sbjct 2885583 GTCTGTTCCCTTTCATCATTTCC--TCCTCCGATCCCTGCTCCTCTTTGTCTTCCAACAG 2885640 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATAT 14303 | ||||| ||||| | || || || || || ||| || ||| | ||| | || Sbjct 2885641 CATCAATCTCATCAACAAACACAATGCAGGGGGCATTCTCCTTGGCTTTCTTAAAAAGAT 2885700 Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363 | || |||| | ||||| ||||| |||||||| || ||||| | | | ||| || Sbjct 2885701 CACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCTGAA-ATC 2885759 Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422 | || ||||| || | || || ||||| || ||| || | ||||||||| || Sbjct 2885760 GAGAAAAAGGGAACACCGGCCTCGCCGGCGATTGCCTTGGCAAGCAAGGTCTTCCCAGTA 2885819 Query 14423 CCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAAAGTAGCG 14481 || || ||| ||||| |||| ||||||| ||||| |||| || | | | Sbjct 2885820 CCCGGAGGGCCTATAAGAAGAACACCTTTCGGGATCCGTGCACCAACTG-CAGTGAACCT 2885878 Query 14482 TTCAGGTTGTTTAAGGAAGTCCACGATTTC 14511 || |||| || | ||| ||||| | ||| Sbjct 2885879 CTCTGGTTTCTTCAAGAACTCCACAACTTC 2885908 >seq161 Length=457060 Score = 91.5 bits (100), Expect = 2e-13 Identities = 213/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || ||||||||||| |||| || || || || ||||| || | |||||||| || | Sbjct 264102 AATCCATCCATCTCCGTCAGCAGCTGGTTAATAGTTTGCTCTCTCTCATCATTGCCA--C 264045 Query 14213 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | | ||||| | || ||| | || || || ||||| ||||| ||||| ||||| | Sbjct 264044 CTCCAAGCCCCGCTCCACGCTGCCTCCCCACAGCATCAATCTCATCAATGAACACGATGC 263985 Query 14271 ATGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | ||| | || || || || || | || | ||| ||| || |||||||| Sbjct 263984 ACGGT-GCCTTCGACTTTGCCTTCTCGAACAAGTCCCTCACCCTCGAAGCTCCGACACCT 263926 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||||| ||||| || | | || | ||| || ||| || ||| | ||| || Sbjct 263925 ACAAACAATTCCACGAACTCCGACGCTGCACAAGAGAAGAACGGTACGCCGGCTTCTCCG 263866 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCA 14449 |||| ||| || || | || |||||||||||||| || || | |||||| ||| Sbjct 263865 GCGACGGCACGAGCTAACAGAGTCTTCCCCGTCCCCGGCGGTCCCACCAGAAGGCAACCC 263806 Query 14450 CGTGGGATCCTGGCACC 14466 |||||| | ||||| Sbjct 263805 TTGGGGATCTTCGCACC 263789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428273525760