Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq27 109 6e-19 seq8 107 2e-18 seq4 107 2e-18 seq59 105 8e-18 seq161 98.7 1e-15 seq2 98.7 1e-15 seq6 89.7 6e-13 seq50 87.8 2e-12 >seq27 Length=2003651 Score = 109 bits (120), Expect = 6e-19 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| || ||||| || ||| | ||||| || ||| || |||||| | Sbjct 1228912 GAGAAGTCGCGTCTCTTCCGCGCGATCGATACAGTCCCATGTGTTGCCCGGAAAGCTCAG 1228853 Query 94762 TGGGCTATGAAGTGGTTTGATACAAA-GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820 ||||| || |||| |||| || | | || ||| || || || || ||| |||| || Sbjct 1228852 TGGGCGCTGCGGTGGATTGAATCAGACGAAGC-TTCATTCGCAGAACGCCTCGTCGCGTT 1228794 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 ||| || || || || ||||||||||| || || ||||| || || | ||||| || || Sbjct 1228793 TGCTTGCGTAGAAGGCATCTTCTTCTCCGGCTCGTTCTGTGCGATCTTCTGGCTGAAAAA 1228734 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 || ||||| ||||| || ||| || || ||||| || || ||||| ||||| ||||| Sbjct 1228733 ACGTGGTCTTATGCCCGGCCTCACATTTTCAAACGAACTAATTTCTCGCGACGAAGGACT 1228674 Query 94941 CCAC 94944 ||| Sbjct 1228673 TCAC 1228670 >seq8 Length=3569224 Score = 107 bits (118), Expect = 2e-18 Identities = 250/368 (68%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | || || || || || || ||| | || || || || || Sbjct 616287 TCAAAGCGTCCAGGCCTCAGCAGTGCAGAGTCGAGAATGTCAGCACGGTTAGTAGCTGCA 616346 Query 9587 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || || | || || || ||| || |||| |||||||| || ||||||||||| |||| Sbjct 616347 ATTACTATGATGCCCGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGTTGATTAA 616404 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9702 || ||||||||||||||||| || | | | | || | | | ||| |||| || Sbjct 616405 GGGTCTGTTCCCGTTCATCATTTCCT--CCTCCAATCCCCGTTCCTCTTTGTCTTCCAAC 616462 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCA-TGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 ||||| |||||||||| ||| || ||||| || | | | | | | ||| ||| | Sbjct 616463 AGCATCGATCTCATCAACGAACACAATGCACGGGGCGTTCTCCTTGGCCTTCTTGAAA-A 616521 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 |||| || || ||| || |||||||| |||||||| || ||||| | | ||||| Sbjct 616522 GATCACGAACTCGCGATGCACCCACACCGACAAACATTTCTACAAATTCAGAACCGGAA- 616580 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || | || || || || | |||||||| || || ||| || | |||||| || Sbjct 616581 ATCGAGAAAAATGGAACGCCGGCCTCACCCGCGATCGCCTTGGCTAGCAAAGTCTTCCCA 616640 Query 9881 GTACCTGG 9888 || || || Sbjct 616641 GTTCCAGG 616648 >seq4 Length=5414181 Score = 107 bits (118), Expect = 2e-18 Identities = 179/255 (70%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAA 9614 ||||| || ||| | || || || || || || || | | ||| || ||| || | | Sbjct 2885493 TCAAGAATGTCAGCACGGTTAGTAGCTGCAATTACTATGACACCCGTATTTCCTT--CGA 2885550 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | |||||||| || ||||||||||| |||| || ||||||| ||||||||| || | Sbjct 2885551 AGCCATCCATTTCAGTCAAAAGTTGATTAAGGGTCTGTTCCCTTTCATCATTTCCT--CC 2885608 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | || || | | ||| |||| || |||||||||||||||| || || ||||| Sbjct 2885609 TCCGATCCCTGCTCCTCTTTGTCTTCCAACAGCATCAATCTCATCAACAAACACAATGCA 2885668 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || || | ||| ||||| || || ||| || |||||||| || Sbjct 2885669 GGGGGCATTCTCCTTGGCTTTCTTAAAAAGATCACGAACTCGCGATGCACCCACACCGAC 2885728 Query 9793 AAACATCTCCACAAA 9807 |||||| || ||||| Sbjct 2885729 AAACATTTCTACAAA 2885743 >seq59 Length=1347071 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 ||| || || || || ||| |||| ||||| || || || || ||||||||||| || || Sbjct 1071116 TTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTC 1071057 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||||||| || | |||||| || || || || || ||||| || ||| || ||||| Sbjct 1071056 GTTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCCAA 1070997 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || || ||||| ||||| ||||| ||| Sbjct 1070996 TGAACTAATTTCTCGCGACGAAGGACTTCAC 1070966 >seq161 Length=457060 Score = 98.7 bits (108), Expect = 1e-15 Identities = 242/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| |||| || |||||||||||||| || | |||||||| | | Sbjct 264102 AATCCATCCATCTCCGTCAGCAGCTGGTTAATAGTTTGCTCTCTCTCATCATTGCCA--C 264045 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || || | || ||| | ||||| |||||||||||||||||||| ||||||| Sbjct 264044 CTCCAAGCCCCGCTCCACGCTGCCTCCCCACAGCATCAATCTCATCAATGAACACGATGC 263985 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | ||| |||| | || || || | |||| || | | || || ||||| Sbjct 263984 ACGGT--GCCTTCGACTTTGCCTTCTCGAACAAGTCCCTCACCCTCGAAGCTCCGACACC 263927 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| ||||| || | | || | ||| || ||| || || | ||| || Sbjct 263926 TACAAACAATTCCACGAACTCCGACGCTGCACAAGAGAAGAACGGTACGCCGGCTTCTCC 263867 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | ||| || || | |||||||| ||||| || ||| ||| | || ||| ||| Sbjct 263866 GGCGACGGCACGAGCTAACAGAGTCTTCCCCGTCCCCGGCGGTCCCACCAGAAGGCAACC 263807 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 || ||||| || || | | |||| | || || | ||| | ||||| |||| Sbjct 263806 CTTGGGGATCTTCGCACCGAGTGCGGTGTATTTATCTGGATTCTTCAAGAAATCGACAAC 263747 Query 9970 TTC 9972 ||| Sbjct 263746 TTC 263744 >seq2 Length=5918456 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 ||| || || || || ||| |||| ||||| || || || || ||||||||||| || || Sbjct 905249 TTCTTTCGCGGATCGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTC 905308 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||||||| || | |||||| || || || || || ||||| || ||| | | ||||| Sbjct 905309 GTTCTGCGCGATCTTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTC-ACATTTCCAA 905367 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || || ||||| ||||| ||||| ||| Sbjct 905368 TGAACTAATTTCTCGCGACGA-GGACTTCAC 905397 >seq6 Length=4684332 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 15877 CAACACTTCCAGTTCCTATCGCAATTGAGACAACTCACAAAAGTTGTCATTGGTTCATCC 15936 ||| ||||||||| ||| ||| || | ||| | ||| | || |||||||||||||| Sbjct 2438369 CAAAACTTCCAGTGATTATTGCAGTTTACACAGGTAACATAGGTCGTCATTGGTTCATCG 2438310 Query 15937 GCAGACCGAGTTTGAAGTTGATAATAGGTTGT-TTTCTTTG 15976 ||| ||||||||| ||||||||||||||||| |||| ||| Sbjct 2438309 GCACTCCGAGTTTGCAGTTGATAATAGGTTGTCTTTCGTTG 2438269 >seq50 Length=1516725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 253/382 (66%), Gaps = 13/382 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || |||| || ||||| | || || || ||||| || ||| || | Sbjct 759190 AACCCATCCATTTCAGTCAGCAGCTGGTTCAGTGTCTGCTCTCGTTCGTCGTTCCCT--C 759133 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || | | | ||| |||| || ||||| ||||| || || ||||| | | Sbjct 759132 CTCCAATTCCGGTTCCTCTCTGCCTTCCTACTGCATCTATCTCGTCTATAAAGACTAGAC 759073 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 |||| |||||| || |||| || | ||||| ||| |||| |||||||| Sbjct 759072 ATGGCGAATTTTCCTTTGC--CTTCTTGAACAAATCCCT--CACTCTTGAGGCGCCCACG 759017 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 |||||||||||||| || || | || | ||| || ||| || || | ||| Sbjct 759016 CCAACAAACATCTCGACGAACTCTGATCCAGAAAGAGAGAAGAACGGAACTCCTGCTTCC 758957 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || || |||||| || ||||| |||||||||||||| || || | || | || Sbjct 758956 CCTGCTATGGCTTTTGCCAGAAGTGTCTTACCCGTACCAGGTGGGCCGGTTAGCATCACA 758897 Query 9908 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 9967 ||| |||||||| || || | || | |||| || ||| | || |||||| Sbjct 758896 CCTTTAGGAATCTTTGCTCCGATGGCAGCAAACTTCTCCGGAGTCTTCAAGAACTCCACA 758837 Query 9968 ATTTCTTCCAATTCAT-CTTTG 9988 ||||||| || || | ||||| Sbjct 758836 ATTTCTTGGAAGTCCTGCTTTG 758815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254267479040