Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq27 152 6e-32 seq2 136 4e-27 seq59 134 2e-26 >seq27 Length=2003651 Score = 152 bits (168), Expect = 6e-32 Identities = 191/257 (74%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTT 59924 |||| || | || |||||| | |||| ||||| || || || || ||||| | ||| Sbjct 1228926 TCAAAGACTCCGACGAGAAGTCGCGTCTCTTCCGCGCGATCGATACAGTCCCATGT-GTT 1228868 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT--GGAGCATCATTTGCACAA 59981 | ||||| | ||||| ||| |||||| || || | ||| ||||| ||| || Sbjct 1228867 GCCCGGAAAGCTCAGTGGGCGCTGCGGTGGATTGAATCAGACGAAGCTTCATTCGCAGAA 1228808 Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || ||||| ||||| ||||| ||||||||||| |||||||||||||| || Sbjct 1228807 CGCCTCGTCGCGTTTGCTTGCGTAGAAGGCATCTTCTTCTCCGGCTCGTTCTGTGCGATC 1228748 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 |||||||| ||||| ||||| || ||||| ||||| | || || ||||| || ||||| Sbjct 1228747 TTCTGGCTGAAAAAACGTGGTCTTATGCCCGGCCTCACATTTTCAAACGAACTAATTTCT 1228688 Query 60102 CGGGACGAGGGCCTCCA 60118 || ||||| || || || Sbjct 1228687 CGCGACGAAGGACTTCA 1228671 >seq2 Length=5918456 Score = 136 bits (150), Expect = 4e-27 Identities = 185/250 (74%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTT 59924 |||| ||| | || |||||||| |||| ||||| || || || || ||||| | || Sbjct 905143 TCAAAGATTCCGACGAGAAGGCACGTCTCTTCCGCGCGATCGACACTGTCCCGTGT-GTC 905201 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAG-CATCATTTGCACAA 59981 | ||||| | ||||| | ||||||| || || || || | || || || | Sbjct 905202 GCCCGTAAAGCCAAGTGGGCGCTCGAGTGGATTGAATCGTGTGATTCTTCTTTCGCGGAT 905261 Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 |||||| | |||||||| ||||||||||| ||||||||||| ||||||||||| || || Sbjct 905262 CGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCGTTCTGCGCGATC 905321 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 || ||||| ||||| || || || ||||| ||||| | || ||||| || || ||||| Sbjct 905322 TTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATT-TCCAATGAACTAATTTCT 905380 Query 60102 CGGGACGAGG 60111 || ||||||| Sbjct 905381 CGCGACGAGG 905390 >seq59 Length=1347071 Score = 134 bits (148), Expect = 2e-26 Identities = 188/257 (73%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTT 59924 |||| || | || |||||||| |||| ||||| || || || || ||||| | || Sbjct 1071222 TCAAAGACTCCGACGAGAAGGCACGTCTCTTCCGCGCGATCGACACTGTCCCGTGT-GTC 1071164 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAG-CATCATTTGCACAA 59981 | ||||| | ||||| | ||||||| || || || || | || || || | Sbjct 1071163 GCCCGTAAAGCCAAGTGGGCGCTCGAGTGGATTGAATCGTGTGATTCTTCTTTCGCGGAT 1071104 Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 |||||| | |||||||| ||||||||||| ||||||||||| ||||||||||| || || Sbjct 1071103 CGTCTCGTCGCTTTTGCTTGCGTGGAAGGCATCTTCTTCTCCGGCTCGTTCTGCGCGATC 1071044 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 || ||||| ||||| || || || ||||| ||||| | || ||||| || || ||||| Sbjct 1071043 TTTTGGCTGAAAAAACGCGGGCTTATGCCCGGCCTCACATTTTCCAATGAACTAATTTCT 1070984 Query 60102 CGGGACGAGGGCCTCCA 60118 || ||||| || || || Sbjct 1070983 CGCGACGAAGGACTTCA 1070967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518656522240