Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq59 134 2e-26 seq27 134 2e-26 seq2 131 2e-25 seq92 86.0 7e-12 seq62 84.2 2e-11 seq6 82.4 8e-11 >seq59 Length=1347071 Score = 134 bits (148), Expect = 2e-26 Identities = 169/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 |||||| ||||| | ||||| |||||||| || || || |||| ||||||||| || || Sbjct 1070993 TTCATTGGAAAATGTGAGGCCGGGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCA 1071052 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| || || ||||||||||||||| || || ||||| ||||| || || | |||||| Sbjct 1071053 GAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAA 1071112 Query 74909 CGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 | | ||| | | || ||||| | ||||| | ||||| || ||| || Sbjct 1071113 AGAAGAATCACACGATTCAATCCACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGG 1071172 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGA 75015 |||||| |||||||| ||||||| | ||||||||| |||| || |||| Sbjct 1071173 GACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTCGTCGGAGTCTTTGA 1071222 >seq27 Length=2003651 Score = 134 bits (148), Expect = 2e-26 Identities = 168/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || ||||| | ||||| |||||||| ||||| || |||| ||| ||||| ||||| Sbjct 1228697 TTCGTTTGAAAATGTGAGGCCGGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACA 1228756 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| || || ||||||||||||||| || || ||||| ||||| ||||||| ||||| Sbjct 1228757 GAACGAGCCGGAGAAGAAGATGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAA 1228816 Query 74909 CGGTGCATCG---GAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 | || ||| || ||||| | | ||||| | |||||| || || || Sbjct 1228817 TGAAGCTTCGTCTGATTCAATCCACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGG 1228876 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGA 75015 ||| ||||||||||| ||||||| | | |||||| |||| || |||| Sbjct 1228877 GACTGTATCGATCGCGCGGAAGAGACGCGACTTCTCGTCGGAGTCTTTGA 1228926 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/188 (70%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 75135 TTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGG 75194 ||||| | |||||||||||| ||||||||||| || || || || | ||||| ||| Sbjct 1229174 TTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACATAGGTTATAAAATGG 1229233 Query 75195 CGCTCATCGTCAGTGAGTTTGTC---CCAATCCTTCAGGTCCCCCGCCAAATCAATCTCC 75251 ||||| ||| | ||||| | | ||| | || ||| || |||||| | |||| Sbjct 1229234 CGCTCGTCGGCGGTGAGGACGCCGGTCCAGTGGACCAAATCCTGCGACAAATCGACCTCC 1229293 Query 75252 TCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTG 75311 || ||||||||||| | | |||||| ||||||| ||| | || ||||| ||| Sbjct 1229294 TCCGCCGTCCAGAAAGACGCCTCCGCCTTCTTGTACATTTCCCAAATTTCCGGGTACTTG 1229353 Query 75312 ATTGGAAA 75319 || || || Sbjct 1229354 ATCGGGAA 1229361 >seq2 Length=5918456 Score = 131 bits (144), Expect = 2e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 |||||| |||| | ||||| |||||||| || || || |||| ||||||||| || || Sbjct 905371 TTCATTGGAAAT-GTGAGGCCGGGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCA 905313 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| || || ||||||||||||||| || || ||||| ||||| || || | |||||| Sbjct 905312 GAACGAGCCGGAGAAGAAGATGCCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAA 905253 Query 74909 CGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 | | ||| | | || ||||| | ||||| | ||||| || ||| || Sbjct 905252 AGAAGAATCACACGATTCAATCCACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGG 905193 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGA 75015 |||||| |||||||| ||||||| | ||||||||| |||| ||| |||| Sbjct 905192 GACAGTGTCGATCGCGCGGAAGAGACGTGCCTTCTCGTCGGAATCTTTGA 905143 >seq92 Length=935974 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 407088 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 407147 Query 79681 AATTGAGCTACGAAAGCAA 79699 || |||||||||| ||||| Sbjct 407148 AACTGAGCTACGAGAGCAA 407166 >seq62 Length=1406682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 || ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 960704 AGCCTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 960763 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| |||||||||| ||| Sbjct 960764 CAACTGAGCTACGAGAGC 960781 >seq6 Length=4684332 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4583209 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4583268 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 4583269 TGAGCTACGAGAGCA 4583283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209871180800