Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq53 138 7e-28 seq34 127 1e-24 seq2 102 5e-17 seq300 95.1 8e-15 seq32 95.1 8e-15 >seq53 Length=1478458 Score = 138 bits (152), Expect = 7e-28 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||||||||||||||| |||||||||||||| | || || || Sbjct 997878 AGACGAAGCACCAAATGGAGAGTGCTCTCCTTCTGAATGTTATAATCAGCTAGAGTGCGG 997819 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || || ||||| |||| | ||| |||||||| || | || ||| Sbjct 997818 CCATCTTCCAGTTGCTTTCCAGCAAAAATTAGCCTCTGCTGGTCCGGGGGAATACCTTCC 997759 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||| | || || || |||||| || |||||||| || | || Sbjct 997758 TTATC-CTGAATTTTGGCCTTGACATTATCAATTGTATCCGAACTCTCCACCTCAAGAGT 997700 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||| |||||||| ||||||||| Sbjct 997699 GATTGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCATG 997660 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||||| ||| |||||||||||||| || ||||| || || | Sbjct 998115 CCGCCACGCAGACGAAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCG 998056 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || ||||| || | | ||| ||||| || || Sbjct 998055 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 997996 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | |||||| || || || || ||||||||| Sbjct 997995 ATCCCTTCCTTGTC-CTGAATTTTAGCTTTAACATTATCGATCGTATCAGAGCTCTCCAC 997937 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || ||||||||||||||||| Sbjct 997936 CTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 997889 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||| || | |||| |||||| || ||||||||||| | ||| || || |||| || Sbjct 997642 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTC 997583 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 | || ||||| |||||||| | | ||| ||||| || || | || |||||||| | Sbjct 997582 CAACTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTC-CT 997524 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || || | || ||| | || ||||| |||||| ||||||| |||||| || | Sbjct 997523 GAATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAAGGTTATTGTCT 997464 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | || ||||| || |||||||| Sbjct 997463 TTCCGGTGAGAGTCTTCACGAAGATCTGCAT 997433 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||||| ||| ||||| |||||| || ||||| ||||| | Sbjct 997431 CCACCGCGAAGTCGTAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCT 997372 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || || || || ||||| || || | | || ||||| || || Sbjct 997371 AGGGTTCTGCCATCCTCGAGCTGCTTCCCGGCGAAAATGAGTCTTTGCTGGTCTGGAGGA 997312 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| ||||| ||||| ||| ||||| |||||| || Sbjct 997311 ATTCCCTCCTTGTCCTGAATCTTAGCTTTTACATTGTCAATAGTGTCAGAGCTCTCGACC 997252 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | |||||||| || || ||||| Sbjct 997251 TCGAGGGTGATGGTCTTCCCTGTCAGAGTTTTCACGAAGATTTGCAT 997205 >seq34 Length=3699824 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||||||| |||||||||||||||||| || || || || || | | Sbjct 905044 CCGCCACGGAGACGCAACACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCA 905103 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || ||||| ||||| || | | ||| ||||| || || Sbjct 905104 AGGGTACGGCCGTCTTCCAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 905163 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| |||| || || | ||| ||||| |||||| || Sbjct 905164 ATACCTTCCTTGTC-CTGAATCTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCGAC 905222 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| ||| || || || || || | || ||||| || ||||||||| Sbjct 905223 TTCCAAGGTGATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATG 905271 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||||||||||||||| || || || || || | ||| || || Sbjct 904825 AGACGCAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCAAGGGTACGG 904884 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| ||||| ||||| || | | ||| |||||||| || | || ||| Sbjct 904885 CCGTCTTCCAATTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCCGGGGGAATACCTTCC 904944 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| || || || || ||||| ||||| | || Sbjct 904945 TTGTC-CTGAATTTTGGCCTTCACGTTATCGATAGTATCCGAACTCTCAACTTCAAGAGT 905003 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | || ||||| || |||||||| Sbjct 905004 GATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 905042 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| |||| ||||| || ||||| |||||| || ||||| ||||| | Sbjct 905271 GCCACCGCGAAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGC 905330 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || ||||||| | ||||| || || || || | | || |||||||| || Sbjct 905331 AAGGGTACGACCGTCTTCCAACTGTTTCCCAGCGAAGATGAGCCTTTGCTGGTCCGGAGG 905390 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||||| ||| ||||| || || | || ||||| ||| || | Sbjct 905391 AATTCCCTCCTTGTCTTGGAT-TTTTGCCTTTACATTGTCGATCGTGTCGGAGCTTTCGA 905449 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || ||||||| ||||| ||||| |||||||| Sbjct 905450 CCTCGAGAGTGATGGTCTTCCCGGTTAGAGTTTTGACAAAGATCTGCAT 905498 >seq2 Length=5918456 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | ||||| ||||| ||||||||||| |||||||| || || | Sbjct 561460 GCCGCCGCGAAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGC 561401 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | | |||| || || || || || || || || | | ||| |||||||| || Sbjct 561400 GAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGG 561341 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| || | || ||| || || ||||| ||| | Sbjct 561340 GATACCCTCCTTGTC-CTGAATCTTCGCCTTCACGTTATCGATAGTGTCGGAAGACTCGA 561282 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || ||||| | || || || |||||||||||| Sbjct 561281 CCTCGAGGGTAATAGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCATG 561232 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | ||||| ||||| ||||||||||| || ||||| ||||| | Sbjct 561232 GCCGCCGCGGAGACGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGC 561173 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||||| | |||| || || || || || || || || | | ||| || || || || Sbjct 561172 GAGTGTTCTCCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGTGG 561113 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||||| ||| || | ||| ||| | || ||||| | || | Sbjct 561112 GATTCCCTCCTTGTCT-TGAATCTTGGCTTTTACGTTGTCGATGGTGTCCGAGGATTCAA 561054 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || || ||||| |||||||| Sbjct 561053 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 561005 >seq300 Length=293291 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| ||||| |||||| || ||||| ||||||| ||| || || Sbjct 10497 AGACGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGG 10556 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || || || || || | | ||| || ||||| || | ||||||| Sbjct 10557 CCGTCTTCGAGCTGCTTGCCCGCGAAAATCAGCCTCTGCTGATCCGGGGGAATTCCCTCC 10616 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| |||| ||| ||| || |||||| || || || |||| || Sbjct 10617 TTGTC-CTGAATCTTTGCTTTGACGTTATCAATTGTATCAGATGATTCAACCTCCAGCGT 10675 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 10676 GATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 10714 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || || || || || | ||| || || | || || || || Sbjct 11424 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCAAGCGTGCGGCCATCCTCGAGCTGC 11483 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || || | ||| |||||||| || | |||||||||||| |||| || Sbjct 11484 TTGCCAGCGAAGATCAATCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATC-TT 11542 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || |||||| | ||| ||||| | ||| || || | ||| ||||| || || || Sbjct 11543 TGCCTTAACGTTGTCAATGGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTTCCTGT 11602 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||||||| Sbjct 11603 GAGGGTCTTAACGAAGATCTGCAT 11626 >seq32 Length=1954954 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | ||| || || |||||||||| ||||| |||||||| Sbjct 589873 CTCCTTTTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAA 589932 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| || ||||| || | ||||||||||| |||| || | || ||| Sbjct 589933 GATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATC-TTCGCCTTTACGT 589991 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || ||| ||| || |||| ||| ||||| || || || | || || | Sbjct 589992 TGTCAATCGTATCTGAAGACTCAACCTCCAAGGTGATCGTCTTCCCAGTGAGTGTCTTGA 590051 Query 34694 CAAAAATCTGCATG 34707 |||| || |||||| Sbjct 590052 CAAAGATTTGCATG 590065 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| || ||| ||| || || || ||||| || | || || || Sbjct 589619 AGGCGGAGCACCAAATGCAGGGTGGACTCTTTCTGGATATTATAGTCCGCTAGGGTGCGG 589678 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | | ||| |||||||| || | |||||| Sbjct 589679 CCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCC 589738 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| || || | || |||||| | |||||| |||| || Sbjct 589739 TTGTCCTGGATC-TTTGCCTTCACATTGTCTATAGTGTCTGAGGACTCCACCTCCAGAGT 589797 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | || || ||||| || ||||| Sbjct 589798 GATCGTCTTGCCCGTGAGTGTCTTAACAAAGATTTGCAT 589836 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| ||||| | ||| || || |||| || || || || ||||| || Sbjct 590101 CTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAA 590160 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| || ||||| || | ||||||||||| |||| || | || ||| Sbjct 590161 GATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACGT 590219 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| |||||| ||| || || | ||| || || || ||||| | ||| || | Sbjct 590220 TGTCAATCGTGTCTGATGACTCAACCTCGAGGGTGATGGTCTTCCCGGTGAGCGTCTTGA 590279 Query 34694 CAAAAATCTGCATG 34707 |||| || |||||| Sbjct 590280 CAAAGATTTGCATG 590293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726163152768