Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq34 136 3e-27 seq300 123 2e-23 seq32 114 1e-20 seq2 109 5e-19 seq251 82.4 7e-11 seq143 82.4 7e-11 >seq34 Length=3699824 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| ||||| ||| | || ||||| || || ||| ||| Sbjct 905498 ATGCAGATCTTTGTCAAAACTCTAACCGGGAAGACCATCACTCTCGAGGTCGAAAGCTCC 905439 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || |||||| |||||||| || || || || || || || Sbjct 905438 GACACGATCGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATTCCTCCGGACCAG 905379 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || ||||| ||||||||| || ||| || | ||||||||| Sbjct 905378 CAAAGGCTCATCTTCGCTGGGAAACAGTTGGAAGACGGTCGTACCCTTGCTGATTACAAC 905319 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||| |||| | || |||||||| Sbjct 905318 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTTCGCGGTGGCAT 905269 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||||||||| || || ||||| ||| | || || || || ||||| || Sbjct 904814 ATGCAAATATTTGTAAAGACCCTTACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCG 904755 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || |||||||| |||||||||||||| || || ||||| Sbjct 904754 GACACGATCGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAG 904695 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| || || || || |||| ||| | ||| || |||| |||||| Sbjct 904694 CAGAGGCTGATATTTGCTGGGAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAAC 904635 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||| || | ||| |||| | ||| |||| ||||| Sbjct 904634 ATTCAGAAGGAGAGTACTCTCCATCTGGTGCTTCGTCTGCGTGGTGG 904588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 171/247 (69%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || ||||||||||| || || Sbjct 905042 ATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACGATCACTCTTGAAGTTGAGAGTTCG 904983 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||| ||||| ||||| || || || || || Sbjct 904982 GATACTATCGATAACGTGAAGGCCAAAATTCAGGACAAGGAAGGTATTCCCCCGGACCAG 904923 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || |||||||||||| | ||| || |||| ||||| Sbjct 904922 CAGAGGCTGATTTTTGCTGGTAAGCAATTGGAAGACGGCCGTACCCTTGCCGACTACAAT 904863 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || || |||||| || | || |||| ||||| | || ||||| || |||| | Sbjct 904862 ATCCAGAAGGAGAGCACTCTCCACCTGGTGCTGCGTCTCCGCGGTGGTAT-GCAAATA-- 904806 Query 27228 TTTGTAA 27234 ||||||| Sbjct 904805 TTTGTAA 904799 >seq300 Length=293291 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || || ||| | || Sbjct 10714 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACGCTGGAGGTTGAATCATCT 10655 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| ||| ||||| ||||| || || || || || ||||| Sbjct 10654 GATACAATTGATAACGTCAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCAG 10595 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || | |||||| | ||| || | ||||||||| Sbjct 10594 CAGAGGCTGATTTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTGCAGATTACAAC 10535 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | ||| ||||| | ||| | || |||||| Sbjct 10534 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTCCGTCTCCGTGGTGGC 10487 >seq32 Length=1954954 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || ||||| ||| | || || || || || || | || Sbjct 590293 CATGCAAATCTTTGTCAAGACGCTCACCGGGAAGACCATCACCCTCGAGGTTGAGTCATC 590234 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| | ||||| || || || ||||| || ||||| || || ||||| Sbjct 590233 AGACACGATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCA 590174 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | |||||| || || | || ||| | ||| || |||||||||| Sbjct 590173 GCAGAGGCTTATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGTACCCTTGCCGATTACAA 590114 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | ||| || | || |||| ||||| Sbjct 590113 CATCCAGAAGGAGTCGACCCTTCACCTCGTTCTGAGGCTGAGGGGAGGCAT 590063 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || ||||| ||||| ||| | || || || || || || |||| Sbjct 590520 ATGCAAATATTCGTTAAGACTCTCACCGGGAAGACCATCACCCTCGAGGTTGAGTCGTCA 590461 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || ||||| || || ||||| Sbjct 590460 GACACGATCGACAACGTTAAGGCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAG 590401 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || || | || ||| | ||| || | ||||||||| Sbjct 590400 CAGAGGCTTATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGTACCCTTGCGGATTACAAC 590341 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | ||| || | || |||| ||||| Sbjct 590340 ATCCAGAAGGAGTCGACCCTTCACCTCGTTCTGAGGCTGAGGGGAGGCAT 590291 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || || ||| | || || | || || || | || Sbjct 590065 CATGCAAATCTTTGTCAAGACACTCACTGGGAAGACGATCACCTTGGAGGTTGAGTCTTC 590006 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||| | || || || || || ||||| || || || || || ||||| Sbjct 590005 AGATACGATTGACAACGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCA 589946 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||||||||| | |||||| | ||| || |||| ||||| Sbjct 589945 GCAGAGGCTTATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACCCTTGCCGACTACAA 589886 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| ||||||||||||||| Sbjct 589885 CATCCAAAAGGAGTCGACC 589867 >seq2 Length=5918456 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| || ||| | || Sbjct 561005 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAATCCTCG 561064 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || ||||||||||| || || || ||||| ||||| Sbjct 561065 GACACCATCGACAACGTAAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 561124 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || | || ||| | || | ||||||||||| Sbjct 561125 CAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAGGACGGGAGAACACTCGCCGATTACAAC 561184 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||| ||| | || ||||| | ||| | || || ||||| Sbjct 561185 ATCCAGAAGGAGAGCACCCTCCACTTGGTCCTCCGTCTCCGCGGCGGCAT 561234 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || ||||| ||| ||||||| || || || || | Sbjct 561229 CGGCATGCAGATTTTCGTCAAGACCCTCACCGGGAAGACTATTACCCTCGAGGTCGAGTC 561288 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| | || || | || || || ||||| ||||| || || || || || || Sbjct 561289 TTCCGACACTATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGA 561348 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||| | | || | ||| ||||| || | || ||| | |||| | | || || Sbjct 561349 CCAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAGGACGGGAGGACCCTCGCTGACTA 561408 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| |||||| ||| | || |||| | ||| | || || ||||| Sbjct 561409 CAACATTCAGAAGGAGAGCACCCTCCACCTGGTGCTCCGTCTTCGCGGCGGCAT 561462 >seq251 Length=123057 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||||||| | || || || || || || | || Sbjct 98736 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCATCA 98677 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || || || ||||| || ||||| || || ||||| Sbjct 98676 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 98617 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || |||| || | || || | ||||||||| Sbjct 98616 CAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACGCTTGCTGATTACAAC 98557 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || | || | ||| | ||||||| || Sbjct 98556 ATCCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGAAT 98507 >seq143 Length=574977 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||||||| | || || || || || || | || Sbjct 166037 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCATCG 165978 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || || || || || || || || ||||| Sbjct 165977 GATACTATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCGCCAGATCAG 165918 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || |||| || | || || | ||||||||| Sbjct 165917 CAGAGGCTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACGCTTGCTGATTACAAC 165858 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || | || | ||| | ||||||| || Sbjct 165857 ATCCAGAAAGAGTCGACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGAAT 165808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913528913920