Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq321 345 5e-90 seq166 237 2e-57 seq27 158 2e-33 seq98 109 7e-19 seq101 91.5 2e-13 >seq321 Length=132638 Score = 345 bits (382), Expect = 5e-90 Identities = 440/606 (73%), Gaps = 0/606 (0%) Strand=Plus/Minus Query 189851 TCTGGTGCTGTTGTACCTTCATCAAATGCTATTGGTCTACACTTCTACCCAATCTGGGAA 189910 |||||||| || | ||| | || ||||| ||| | || |||||||| ||||||||| Sbjct 87046 TCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATCTGGGAA 86987 Query 189911 GCAGCAACAGTAGATGAGTGGCTTTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCAC 189970 |||||| | || ||||||||| | |||||||| |||||||| | | | | | ||| Sbjct 86986 GCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACAC 86927 Query 189971 TTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAATTATCATACAGACTAGGT 190030 ||| | ||||| | | |||||||| | |||||||| | | | | || ||| Sbjct 86926 TTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGT 86867 Query 190031 ATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTC 190090 ||| | |||||||| |||||| |||||||| || || | || || ||| || ||| Sbjct 86866 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTC 86807 Query 190091 CTTGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGT 190150 | | ||||| | ||||| || || |||||||||||||||||||| || |||||| Sbjct 86806 TTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATATCAGGT 86747 Query 190151 ACATTCAACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCCAT 190210 || |||||||||||| |||||||||| || || || || ||||||||||| |||||||| Sbjct 86746 ACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATCCATTCCAC 86687 Query 190211 ATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCATTATTCTCTGCAATGCATGGTTCACTT 190270 ||| ||| ||||| ||| | || || || | ||||| ||| ||||||||||| | Sbjct 86686 ATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTG 86627 Query 190271 GTAACATCTTCTCTAATCAGAGAAACAACTGGTTTAGAGTCACAGAACTATGGTTACAAG 190330 ||||| ||| | | ||||| ||||| || | || || || | ||||||| Sbjct 86626 GTAACCTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAAGGTTACAGA 86567 Query 190331 TTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTTGGTAGACTT 190390 || || ||||| |||||||| ||||| || ||||||||||||||||| ||||| || | Sbjct 86566 TTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 86507 Query 190391 ATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCTTAGCAGTATTC 190450 |||||||| |||||| ||||||||||| | |||||||||| || || | | Sbjct 86506 ATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTGGCTGCTTGG 86447 Query 190451 CCTGTA 190456 |||||| Sbjct 86446 CCTGTA 86441 >seq166 Length=380847 Score = 237 bits (262), Expect = 2e-57 Identities = 388/554 (70%), Gaps = 20/554 (4%) Strand=Plus/Plus Query 183621 TAACTGGCAGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAGTTATGT 183680 |||| || |||| ||| ||| ||||| || || || || |||| || || || | | Sbjct 380275 TAACAGGGGGTCTGTGGCTGAGCGATATTGCTCACCACCATTTAGCTATTGCTATTCTTT 380334 Query 183681 TTATCATTGCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGAAAGAGA 183740 | | ||||| |||||||||||| | || |||||||| |||||||| || ||||| | Sbjct 380335 TCCTGATTGCCGGTCATATGTATAGGACCAACTGGGGCATTGGTCATGGTATTAAAGACA 380394 Query 183741 TATTAGATGGTCAGAATGG----TTTCCCACAGG---GTGTCACACACAGAGGATTATAT 183793 | ||||| | ||| || || ||| ||||| | |||| | || | || ||| Sbjct 380395 TTTTAGAGGCTCATAAAGGGCCATTT---ACAGGCCAGGGTCATA---AGGGCCTT-TAT 380447 Query 183794 GAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAGGATCT 183853 ||| | ||| || |||| | || || ||| |||| || || || || ||| |||| ||| Sbjct 380448 GAAATCCTAACAACATCATGGCACGCTCAATTATCTCTTAACCTAGCTATGTTAGGCTCT 380507 Query 183854 ATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTGGTATT 183913 | | || | || | |||||||||||| | ||||| ||||||||||| || | |||| Sbjct 380508 TTAACCATTGTTGTAGCTCATCATATGTATTCCATGCCCCCTTATCCATACCTAGCTATT 380567 Query 183914 GAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTCTTATT 183973 || ||| ||| | | ||| ||||| ||||| |||||||| || || ||||| || Sbjct 380568 GACTATGGTACACAACTTTCATTGTTCACACATCACATGTGGATCGGCGGATTTCTCATA 380627 Query 183974 GTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTGTTCAA 184030 || ||||| | |||||||| | ||| |||| |||||||||| ||| || || | Sbjct 380628 GTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTACGATCCAACTACTCGA 380687 Query 184031 CATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTG 184090 | | | || |||||||| | | |||| | ||||||||||| || | Sbjct 380688 TACAACG---ATCTATTAGATCGTGTCCTTAGGCACCGCGATGCAATCATATCACATCTT 380744 Query 184091 AACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATT 184150 ||||||| ||| || ||| |||||||||| |||||||| | |||||||| ||||||| Sbjct 380745 AACTGGGCATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTATATTCATAATGATACC 380804 Query 184151 ATGAGAGCATTGGG 184164 ||||| || || || Sbjct 380805 ATGAGCGCTTTAGG 380818 Score = 228 bits (252), Expect = 1e-54 Identities = 372/533 (70%), Gaps = 2/533 (0%) Strand=Plus/Plus Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACACGCAGATGCTCATGATT 182906 |||| || || || | || ||||| ||||| ||||| |||| || |||||||| |||| Sbjct 379537 TAGCTAAGGGCCCCGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATT 379596 Query 182907 TTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTTG 182966 | |||| ||| | |||||| || | |||| || ||||| ||||| ||| || || | Sbjct 379597 TCGATAGTCATACCAGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCTCATTTCG 379656 Query 182967 CTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGTTTT 183026 || || || |||||| | ||| ||||| | | | ||| || ||||| | |||| Sbjct 379657 GCCAACTCTCCATTATCTTTCTTTGGCTGAGCGGCATGTACTTCCACGGTGCCCGTTTTT 379716 Query 183027 CAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGGTTT 183086 | || ||| || |||| | || || ||||| | | |||| |||| || || |||| Sbjct 379717 CCAATTATGAAGCATGGCTAAGTGATCCTACTCACATTAGACCTAGTGCCCAGGTAGTTT 379776 Query 183087 GGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGTGCAGGATATCAAGGTATTA 183146 |||| ||| | |||||||| ||||||||||| ||| ||| | || | | ||| || Sbjct 379777 GGCCAATAGTAGGTCAAGAAATATTGAATGGTGATGTGGGCGGGGGTTTCCGAGGAATAC 379836 Query 183147 GAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAATGAAACTCAAC 183206 ||| || || ||||| |||||||| ||| |||||| || ||||| | |||| |||| Sbjct 379837 AAATAACCTCCGGTTTTTTTCAGATTTGGCGAGCATCTGGAATAACTAGTGAATTACAAC 379896 Query 183207 T-AATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCA 183265 | || | | ||| | ||||| ||| | | || || | ||| || ||| ||| Sbjct 379897 TCTATTGTAC-CGCAATTGGTGCATTAATCTTTGCTGCGTTAATGCTTTTTGCGGGTTGG 379955 Query 183266 TTTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAATGTAGAATCTATGATG 183325 || |||| |||| || || || || || | ||||| || |||||||||||||| || Sbjct 379956 TTCCATTATCACAAAGCCGCCCCAAAATTGGCTTGGTTCCAAGATGTAGAATCTATGTTG 380015 Query 183326 AATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCTTTAGGATGGGCAGGACA 183378 ||||| ||| | || || || || || ||||| ||| | ||||| ||||| Sbjct 380016 AATCACCACTTAGCGGGGTTACTAGGACTTGGGTCTCTTTCTTGGGCGGGACA 380068 >seq27 Length=2003651 Score = 158 bits (174), Expect = 2e-33 Identities = 226/316 (72%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 186052 TTTCATAGCACAGGCGCATACTACGCAAGCTGCTCTATATGTTCATCATCAATACATTGC 186111 ||| |||||||| | |||||| |||||||| ||||| |||||| |||||||| || Sbjct 1544599 TTTTATAGCACAAGATTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGC 1544540 Query 186112 AACTGCTC-TGATGGTTGGTGCTTTTGCGCATGGAGCAATATTTTTTGTTAGAGACTTTG 186170 | | || | | | || || ||||| |||||||| ||||| || ||||||| | | Sbjct 1544539 AGG-GTTCATCAAGACAGGAGCCTTTGCTCATGGAGCTATATTCTTCATTAGAGATTATA 1544481 Query 186171 ATCCTACTCTGAATAAGGACAATGTTCTTGATAGAATGCTACAGCACAAAGAAGCAATTA 186230 || | |||| |||| ||||| | | |||||| || | || |||||||| || | Sbjct 1544480 ATATAGAACGGAATGAGGATAATGTATTGGCCAGAATGTTAGACCATAAAGAAGCTATCA 1544421 Query 186231 TAAGTCACTTAAGTTGGGTATCACTATTCCTTGGATTCCATACTTTAGGAATCTATGTCC 186290 || ||| |||||||||| || || || || |||||||| | || | ||||| | Sbjct 1544420 TATCTCATTTAAGTTGGGCCAGCCTGTTTCTGGGGTTCCATACCCTGGGCCTTTATGTTC 1544361 Query 186291 ATAATGATGTAGTAATGGCATTTGGTCATCCTGAGAGACAGATATTAATTGAACCTATAT 186350 |||| ||||| | | || |||||| ||| || | ||| || || || |||||||||| Sbjct 1544360 ATAACGATGTCATGCTCGCCTTTGGTACTCCGGAAAAACAAATCTTGATCGAACCTATAT 1544301 Query 186351 TTGCACAGTGGATACA 186366 |||| || |||||||| Sbjct 1544300 TTGCTCAATGGATACA 1544285 >seq98 Length=888863 Score = 109 bits (120), Expect = 7e-19 Identities = 248/362 (69%), Gaps = 17/362 (5%) Strand=Plus/Plus Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACA-CGCAGATGCTCATGAT 182905 |||| || || || |||| ||||| ||||| ||||| |||| || |||||||| ||| Sbjct 707033 TAGCTAAGGGCCCCGAAACTACCACTTGGATTTGGAACCTACATCGTTGATGCTCACGAT 707092 Query 182906 TTTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTT 182965 || |||| ||| |||||| || |||| || ||||| ||||| ||| | ||| Sbjct 707093 TTCGATAGTCATATCAGTGATTTG---GAGATTTGTCGAAAAGTATTTAGTGCTC-CTTC 707148 Query 182966 --GCTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGT 183023 || || || || ||||| | ||| |||| | | | ||| | ||||| | Sbjct 707149 CAGC-CAACTCTCCATTATCTTCTT-TGGCTGAGTGGCATGTACTTCCCCGGTGCCCT-T 707205 Query 183024 TTTCAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGG 183083 |||| || ||| || |||| | || || ||||| | | |||| |||| || || | Sbjct 707206 TTTCCAATTATGAAGCATGGCTAAGTGATCCTACTCACATTAGACCTAGTGCCCAGGTAG 707265 Query 183084 TTTGGCCTATACTT-----GGTCAAGAGATATTGAATGGAGATCAGGGTGCAGGATAT-C 183137 ||||||| ||| | |||||||| ||||||||||| || ||||| |||| | | Sbjct 707266 TTTGGCCAATAGTAAAGTAGGTCAAGAAATATTGAATGGTGACGTGGGTG-GGGATTTCC 707324 Query 183138 AAGGTATTAGAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAATG 183197 |||||| ||| || || | ||| ||||| || ||| |||||| || ||||| | || Sbjct 707325 CAGGTATACAAATAACCTCCGTTTTTTTTCATATTTGGCGAGCATCTGGAATAACTAGTG 707384 Query 183198 AA 183199 || Sbjct 707385 AA 707386 >seq101 Length=849353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 182555 GATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCT 182614 |||||| |||||| | |||||||||||||||||||| |||||||||||| || | | Sbjct 714906 GATGTAAAGGAAATGATACCTTGGGATGGGTGCAAAGCTAAGCAAATTGCTACCGCGACA 714847 Query 182615 AGAACTG-AGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATG 182658 ||||| | | |||||||||| |||| ||||||||| | || || Sbjct 714846 AGAACCGAAAAATTGTGTAGGCTGTACTAGATGTGAAGCTGCTTG 714802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631420128015360