Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq53 96.9 2e-15 seq34 95.1 9e-15 >seq53 Length=1478458 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || ||||| || || || || |||| || || ||| | Sbjct 997889 ATGCAGATTTTTGTGAAGACCCTTACCGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 997948 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| || ||| ||||| ||||| ||||| | || || | Sbjct 997949 GATACGATCGATAAT--GTTAAAGCTAAAATTCAGGACAAGGAAGGGATCCCTCCCGACC 998006 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || |||| |||| |||| | | | || |||| Sbjct 998007 AGCAGAGGCTCATCTTTGCGGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCGGACTACA 998066 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||||||||| | ||| |||| | ||| |||||||||| Sbjct 998067 ACATCCAGAAGGAGAGCACTCTTCATCTGGTGCTTCGTCTGCGTGGCGG 998115 >seq34 Length=3699824 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||| || ||||| || || | || ||||||||| || Sbjct 905498 ATGCAGATCTTTGTCAAAACTCTAACCGGGAAGACCATCACTCTCGAGGTCGAAAGCTCC 905439 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || || |||||| ||||| || || |||| ||| | Sbjct 905438 GACACGATCGACAAT--GTAAAGGCAAAAATCCAAGACAAGGAGGGAATTCCTCCGGACC 905381 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || || || || ||||| ||||| |||| || | | | | ||||||| Sbjct 905380 AGCAAAGGCTCATCTTCGCTGGGAAACAGTTGGAAGACGGTCGTACCCTTGCTGATTACA 905321 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | || |||| |||| | || || ||| Sbjct 905320 ACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTTCGCGGTGGC 905271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || ||||| || || || || | || || || ||| | Sbjct 904814 ATGCAAATATTTGTAAAGACCCTTACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCG 904755 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || || ||||| ||||||||||| | || ||| | Sbjct 904754 GACACGATCGATAAT--GTGAAGGCGAAAATTCAGGACAAAGAAGGCATCCCTCCGGATC 904697 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || |||| |||| |||| | | |||| |||| Sbjct 904696 AGCAGAGGCTGATATTTGCTGGGAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACA 904637 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGA 28019 |||| || || ||||| ||| | ||| |||| | ||| ||||||| || || Sbjct 904636 ACATTCAGAAGGAGAGTACTCTCCATCTGGTGCTTCGTCTGCGTGGTGGGGA 904585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858513982592