Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq32 107 2e-18 seq143 95.1 1e-14 seq251 91.5 1e-13 seq53 87.8 2e-12 seq300 86.0 5e-12 >seq32 Length=1954954 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || |||||||| || || |||| |||||||||||||| ||||| Sbjct 589873 CTCCTTTTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAA 589932 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| | |||||| || | || | | ||| |||||| ||| ||| || | ||| Sbjct 589933 GATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTCGCCTTTA-CGT 589991 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | |||||| ||||| || |||| ||||| | || || || || || || | Sbjct 589992 TGTCAATCGTATCTGAAGACTCAACCTCCAAGGTGATCGTCTTCCCAGTGAGTGTCTTGA 590051 Query 39272 CAAAGATTTGCAT 39284 ||||||||||||| Sbjct 590052 CAAAGATTTGCAT 590064 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||||||||| || || |||| || ||||| || || || || Sbjct 590101 CTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGCTGCTTCCCGGCGAA 590160 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| | |||||| || | || | || ||| |||||| ||| ||| |||| ||| Sbjct 590161 GATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 590219 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| || ||||| || || | ||||| | || || || ||||| || | Sbjct 590220 TGTCAATCGTGTCTGATGACTCAACCTCGAGGGTGATGGTCTTCCCGGTGAGCGTCTTGA 590279 Query 39272 CAAAGATTTGCAT 39284 ||||||||||||| Sbjct 590280 CAAAGATTTGCAT 590292 >seq143 Length=574977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || ||| || || ||||| ||||| ||||| || || |||| || Sbjct 165600 CACCAGATGCAGAGTAGACTCCTTCTGGATATTGTAATCTGCAAGGGTGCGGCCGTCTTC 165659 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||||||||| || || |||||||| || | ||| | || ||| || || Sbjct 165660 GAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTG 165719 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | | | | ||||| |||||| || || | ||||| | || Sbjct 165720 GATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCGACCTCGAGGGTGATCGTCTT 165779 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || |||||||| ||||| Sbjct 165780 CCCAGTGAGGGTCTTCACAAAGATCTGCAT 165809 >seq251 Length=123057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || ||| || || ||||| ||||| ||||| || || |||| || Sbjct 98299 CACCAGATGCAGAGTAGACTCCTTCTGAATATTGTAATCTGCAAGGGTGCGGCCGTCTTC 98358 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||||||||| || || |||||||| || | ||| | || ||| || || Sbjct 98359 GAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTG 98418 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | | | | ||||| |||||| || || | ||||| | || Sbjct 98419 GATCTTCGCCTTCACATTATCAATAGTATCAGACGACTCAACCTCGAGGGTGATTGTCTT 98478 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || ||||| ||||| Sbjct 98479 CCCGGTGAGGGTCTTCACGAAGATCTGCAT 98508 >seq53 Length=1478458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || |||||||| || || || || || || || || || || |||| || Sbjct 998098 CACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGGCCGTCCTC 998039 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || |||||||| || || | ||||||||||| || | | || |||||| Sbjct 998038 CAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTG 997979 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||||| ||| | | | | |||||| ||| |||||| || | ||||| | Sbjct 997978 AATTTTAGCTTTAACATTATCGATCGTATCAGAGCT---CTCCACCTCAAGGGTGATGGT 997922 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || || ||||| || ||||| Sbjct 997921 CTTTCCGGTAAGGGTCTTCACAAAAATCTGCAT 997889 >seq300 Length=293291 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || || | || ||| | || || ||| ||| || || || || || || Sbjct 11168 CATGCCTCCCCTCAACCTTAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 11227 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| || || | || |||||||||||||| ||||| || || | ||||||||| | Sbjct 11228 GGCAAGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGG 11287 Query 39174 GGGCACGCTCTCTTTGTCCATGA--TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 || | || ||| || ||| || ||| | || | |||| | ||||| ||| Sbjct 11288 AGGAATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTGTCG--ATGGTATCCGAGGAC 11345 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | ||||| | || || || || || || || ||||| ||||| Sbjct 11346 TCGACCTCGAGGGTGATCGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 11398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429540909362048