Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq300 116 3e-21 seq32 102 6e-17 seq143 95.1 8e-15 seq34 95.1 8e-15 seq2 95.1 8e-15 seq53 93.3 3e-14 seq43 84.2 1e-11 >seq300 Length=293291 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || |||||||| ||||| || || ||| || Sbjct 11398 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 11339 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| ||| || || || || || | || ||||| || Sbjct 11338 GATACCATCGACAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCAGACCAG 11279 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||||||||| || || || | ||||| | | ||| |||||| Sbjct 11278 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTGCCGACTACAAC 11219 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | || | || |||||||| | ||||| Sbjct 11218 ATCCAGAAGGAGTCCACCCTTCACCTTGTGCTAAGGTTGAGGGGAGG 11172 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| || | Sbjct 10714 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACGCTGGAGGTTGAATCATCT 10655 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| ||| ||| ||||| || || | || || ||||| Sbjct 10654 GATACAATTGATAACGTCAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCAG 10595 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || || ||||||| ||||| | | ||||||||| Sbjct 10594 CAGAGGCTGATTTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTGCAGATTACAAC 10535 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | ||| | ||| Sbjct 10534 ATCCAGAAGGAGTCTACTCTGCATCTGGTT 10505 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || ||| | Sbjct 11170 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCA 11111 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | || | | ||||| ||||| | || || || || Sbjct 11110 GATACAATCGACAATGTTAAAGCCAAGA-TCCAGGACAAGGAAGGGATTCCTCCGGACCA 11052 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || || || || | ||||| | | ||| ||||| Sbjct 11051 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAA 10992 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || ||||| | ||| | ||| Sbjct 10991 CATCCAGAAGGAATCCACCCTCCATCTTGTT 10961 >seq32 Length=1954954 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || |||||||| || ||||||||||| || || || ||| | Sbjct 589836 ATGCAAATCTTTGTTAAGACACTCACGGGCAAGACGATCACTCTGGAGGTGGAGTCCTCA 589777 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || |||| | | ||||| || || | || || || || Sbjct 589776 GACACTATAGACAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGCATTCCCCCGGACCA 589718 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || ||||| || | ||||| ||| || || || Sbjct 589717 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTAGCGGACTATAA 589658 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| | ||||| || Sbjct 589657 TATCCAGAAAGAGTCCACCCTGCATTTGGT 589628 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| || || |||||||| | || ||||| || | Sbjct 590064 ATGCAAATCTTTGTCAAGACACTCACTGGGAAGACGATCACCTTGGAGGTTGAGTCTTCA 590005 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | |||| || || ||||| || ||| | || || ||||| Sbjct 590004 GATACGATTGACAACGTAAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAG 589945 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||||||||| || ||||||| || || | | ||| |||||| Sbjct 589944 CAGAGGCTTATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACCCTTGCCGACTACAAC 589885 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 589884 ATCCAAAAGGAGTCGAC 589868 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || ||||| || || || ||||| ||||| ||||| || | Sbjct 590520 ATGCAAATATTCGTTAAGACTCTCACCGGGAAGACCATCACCCTCGAGGTTGAGTCGTCA 590461 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || | | ||||| || || | || || ||||| Sbjct 590460 GACACGATCGACAACGTTAAGGCGAAGA-TCCAGGACAAGGAGGGCATTCCTCCGGATCA 590402 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || || || |||| || || | | |||||||| Sbjct 590401 GCAGAGGCTTATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGTACCCTTGCGGATTACAA 590342 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | || | ||| | ||| || | ||||| Sbjct 590341 CATCCAGAAGGAGTCGACCCTTCACCTCGTTCTGAGGCTGAGGGGAGG 590294 >seq143 Length=574977 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || ||||| ||||| || || || || Sbjct 166037 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCATCG 165978 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || || || || || || ||| | ||||||||||| Sbjct 165977 GATACTATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCGCCAGATCAG 165918 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || || || ||||| || | ||||| | | ||||||||| Sbjct 165917 CAGAGGCTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACGCTTGCTGATTACAAC 165858 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 165857 ATCCAGAAAGAGTCGAC 165841 >seq34 Length=3699824 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || ||||||||||| |||||||| || Sbjct 905042 ATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACGATCACTCTTGAAGTTGAGAGTTCG 904983 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || |||||| ||||| |||||| | || || || || Sbjct 904982 GATACTATCGATAACGTGAAGGCCAAAATTCAGGACAAGGAAGGTATTCCCCCGGACCAG 904923 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || ||| ||||||||| || || | | ||| ||||| Sbjct 904922 CAGAGGCTGATTTTTGCTGGTAAGCAATTGGAAGACGGCCGTACCCTTGCCGACTACAAT 904863 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 904862 ATCCAGAAGGAG 904851 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || ||||| || ||||| || || || || | || Sbjct 904814 ATGCAAATATTTGTAAAGACCCTTACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCG 904755 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | |||| || ||||||||||| | || || ||||| Sbjct 904754 GACACGATCGATAATGTGAAGGCGAAAA-TTCAGGACAAAGAAGGCATCCCTCCGGATCA 904696 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | |||||||| || || || ||||| |||| ||||| | | ||| ||||| Sbjct 904695 GCAGAGGCTGATATTTGCTGGGAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAA 904636 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 904635 CATTCAGAAGGAG 904623 >seq2 Length=5918456 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || ||||| ||| || Sbjct 561005 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAATCCTCG 561064 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| || ||| ||||| || || | || |||||||| Sbjct 561065 GACACCATCGACAACGTAAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 561124 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||| || || || |||| | || | | |||||||||| Sbjct 561125 CAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAGGACGGGAGAACACTCGCCGATTACAAC 561184 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 561185 ATCCAGAAGGAG 561196 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || || || ||||| || || || | Sbjct 561461 ATGCAGATTTTCGTCAAGACCCTCACTGGGAAGACTATTACCCTCGAGGTCGAGTCTTCC 561520 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || || ||||| ||||| | || || ||||| Sbjct 561521 GACACTATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCAG 561580 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| ||||| || ||||||| | | ||| | | || |||||| Sbjct 561581 CAGCGGTTGATTTTTGCAGGCAAGCAGTTGGAAGATGGCAGAACTCTGGCTGACTACAAC 561640 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 561641 ATCCAGAAGGAATCCAC 561657 >seq53 Length=1478458 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || |||||||| || || || || Sbjct 997661 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACAATCACTCTTGAGGTGGAGAGTTCG 997720 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| || || || |||||| | || || || || Sbjct 997721 GATACAATTGATAATGTCAAGGCCAAAA-TTCAGGATAAGGAAGGTATTCCCCCGGACCA 997779 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||| ||||| || || ||||||||||| | |||||| ||| ||||| || Sbjct 997780 GCAGAGGCTAATTTTTGCTGGAAAGCAACTGGAAGATGGCCGCACTCTAGCTGATTATAA 997839 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||| ||| | ||||| || Sbjct 997840 CATTCAGAAGGAGAGCACTCTCCATTTGGT 997869 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || ||||| || ||||| || || || || | | Sbjct 997889 ATGCAGATTTTTGTGAAGACCCTTACCGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 997948 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | |||||| ||||| ||||| | || || || || Sbjct 997949 GATACGATCGATAATGTTAAAGC-TAAAATTCAGGACAAGGAAGGGATCCCTCCCGACCA 998007 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || ||||| |||| ||||| | | || ||||| Sbjct 998008 GCAGAGGCTCATCTTTGCGGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCGGACTACAA 998067 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 998068 CATCCAGAAGGAG 998080 >seq43 Length=1752904 Score = 84.2 bits (92), Expect = 1e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || |||||||| ||||| || |||||||||||||| ||||| ||| Sbjct 1311383 AAGATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATCACTCTCGAGGTTGAATCC 1311324 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTG 23716 | ||||| |||| ||| | || | ||| ||| |||||||| |||| Sbjct 1311323 TCTGACACCATTGACAATGTGAAGGC-AAAGATTCAGGACAAAGAGGGTG 1311275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005908935168