Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq27 152 4e-32 seq59 145 7e-30 seq2 136 3e-27 >seq27 Length=2003651 Score = 152 bits (168), Expect = 4e-32 Identities = 442/669 (66%), Gaps = 30/669 (4%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| ||||| || ||||| ||| |||||||||||||| || || | | ||| || Sbjct 1228364 TTTCTGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAA 1228423 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 ||||| |||| |||||||| | |||||| ||| | | ||||| | || Sbjct 1228424 CTCCATCCAATCGAACGGATTCACAACATTGTAAATTTTGTGATGACCGAGAGCGCCGAG 1228483 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 |||||| ||||| || ||||| |||||||||||||| | |||| ||| ||||| | || Sbjct 1228484 CAATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACCAA 1228543 Query 4436 TCTCACA-GGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | | || || ||||||| || || | || || | |||||| || || || ||| Sbjct 1228544 -CGCGCATGGGAGCGCGT-TG-CAGATGAATTCCCGCTCTATATCCACTGCGTC---GAT 1228597 Query 4493 TAT-ATCTTTT--ATTTTATCTTTAGATGGTTT---ATTTACTAA---GTATCCAAACAA 4543 || ||| | | || |||| || | || ||||| || |||| || Sbjct 1228598 TACGATCGATCGAACTTGTTCTTCGGAAAGCTTGTGATTTAGAAAACTGTAT------AA 1228651 Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603 |||||| || ||||| || || | |||||||| | ||| |||||||| ||||| || Sbjct 1228652 TAAACAAGCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGT 1228711 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | |||||||| | ||| | ||||| ||||| || || || || || || || || Sbjct 1228712 GAGGCCGGGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAA 1228771 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| |||||||||||| |||||||| || | || |||| || |||| ||| Sbjct 1228772 GAAGATGCCTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGA---AGCTTCGTC 1228828 Query 4724 ---TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 || |||||| | ||||| | |||||| ||| || || | ||| | || Sbjct 1228829 TGATTCAATCCACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGAT 1228888 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| || | || || | ||||| ||||| || || | ||| ||||| Sbjct 1228889 CGCGCGGAAGAGACGCGACTTCTCGTCGGAGTCTTTGATATATGTTTCCAATAGAAGGCT 1228948 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 |||||||| || ||||| || || || || ||||| || || || || || ||||| Sbjct 1228949 GTACATTTCTGAGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAATGCCCTTGCTTC 1229008 Query 4901 TGTTACTTG 4909 || ||| || Sbjct 1229009 TGCTACCTG 1229017 >seq59 Length=1347071 Score = 145 bits (160), Expect = 7e-30 Identities = 422/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| || ||||| ||| ||||||||||| || || || | |||||||| Sbjct 1070661 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 1070720 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| |||| || ||||||| |||| ||| ||| | | ||||| || | | Sbjct 1070721 TCCATCCAATCGAAAGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 1070780 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 ||||| |||||||| ||||| |||||||| ||||| || || | ||| ||||| | || Sbjct 1070781 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCAA- 1070839 Query 4437 CTCACA-GGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 | |||| || || || || || | || ||| | || ||| || || || | | Sbjct 1070840 CGCACACGGGAGTGC--ATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACG 1070897 Query 4494 AT--ATCT--TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACA 4549 || |||| | || | | || | ||| | | || | | |||||||||| Sbjct 1070898 ATCGATCTAACGTGTTCTTCGGTAAGCTTGTTCTTCAGCAAACTGT----ACAATAAACA 1070953 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 || |||||||| || | |||||||| | ||| ||||| || ||||| || | || Sbjct 1070954 AGCGAAATCACAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCC 1071013 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 |||||| | || | ||||| |||||||| || ||| || || || || ||||| || Sbjct 1071014 GGGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGAT 1071073 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAAT 4729 |||||| ||| ||||| || || | || | |||| || | || ||| Sbjct 1071074 GCCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGATTCAAT 1071133 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| | | ||||| || ||||| || ||||| | |||| || ||| || Sbjct 1071134 CCACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAA 1071193 Query 4790 TA-ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | | | | || || | ||||| |||||||| |||| ||| || || ||||||| Sbjct 1071194 GAGACGTGC-CTTCTCGTCGGAGTCTTTGATATAAGTTTCTAATAGAAGACTGTACATTT 1071252 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA 4888 | || ||||| || || || || ||||| || ||||| || Sbjct 1071253 CTGAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 1071292 >seq2 Length=5918456 Score = 136 bits (150), Expect = 3e-27 Identities = 420/639 (66%), Gaps = 17/639 (3%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| || ||||| ||| ||||||||||| || || || | |||||||| Sbjct 905701 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 905642 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||||||||||| |||| ||| ||| | | ||||| || | | Sbjct 905641 TCCATCCAATCAAACGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 905582 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 ||||| |||||||| ||||| |||||||| ||||| || || | ||| ||||| | || Sbjct 905581 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCAA- 905523 Query 4437 CTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | |||| | || || || || | || ||| | || ||| || || || | | | Sbjct 905522 CGCACACGGAGTGC--ATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACGA 905465 Query 4495 T--ATCT--TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 | |||| | || | | || | ||| | | || | | |||||||||| Sbjct 905464 TCGATCTAACGTGTTCTTCGGTAAGCTTGTTCTTCAGCAAACTGT----ACAATAAACAA 905409 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 || |||||||| || || | ||||| | ||| ||||| || | ||| || | ||| Sbjct 905408 GCGAAATCACAGTG-AAGTCCTCGTCGCGAGAAATTAGTTCATT-GGAAATGTGAGGCCG 905351 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | || | ||||| |||||||| || ||| || || || || ||||| ||| Sbjct 905350 GGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATG 905291 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| ||| ||||| || || | || | |||| || | || |||| Sbjct 905290 CCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGATTCAATC 905231 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 || | | ||||| || ||||| || ||||| | |||| || ||| || Sbjct 905230 CACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAG 905171 Query 4791 A-ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | | | || || | |||| |||||||| |||| ||| || || |||||||| Sbjct 905170 AGACGTGC-CTTCTCGTCGGAATCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTC 905112 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA 4888 || ||||| || || || || ||||| || ||||| || Sbjct 905111 TGAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 905073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044936618368