Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq27 161 1e-34 seq59 154 2e-32 seq9 113 6e-20 >seq27 Length=2003651 Score = 161 bits (178), Expect = 1e-34 Identities = 428/651 (66%), Gaps = 11/651 (2%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| || || ||||| || | |||||||| |||||||| || || | || || || Sbjct 1228364 TTTCTGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAA 1228423 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| |||| || ||||| || |||| |||||||| | | || | | | Sbjct 1228424 CTCCATCCAATCGAACGGATTCACAACATTGTAAATTTTGTGATGACCGAGAGCGCCGAG 1228483 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || || ||| ||||||||||| ||||| |||| | || | |||||||| | | Sbjct 1228484 CAATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACCAA 1228543 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 ||| || || | | || || | || ||| || || || | || || Sbjct 1228544 CGCGCATGGGAGCGCGTTGCAGATGAATTCCCGCTCTATATCCACTGCGTCGATTACGAT 1228603 Query 48089 CGATGTTACCGTTTCCTC----ACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144 |||| || ||| || | | ||| | | || ||| ||| |||||| | Sbjct 1228604 CGATCGAACTTGTTCTTCGGAAAGCTTGTGATTTAGAAAACTGTATAA----TAAACAAG 1228659 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 | ||||| || ||||| ||||| || | | ||||| |||||| ||||||||||| |||| Sbjct 1228660 CGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCGG 1228719 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||| || ||||||||||| ||||| || || || ||| || || || ||||| |||| Sbjct 1228720 GCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATGC 1228779 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT-TG--TGTATCC 48321 |||||||| ||||| ||| || | ||| || | ||||||| || | |||| Sbjct 1228780 CTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGATTCAATCC 1228839 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 |||| | ||||| | ||| ||| ||||| || | ||| || || || |||| Sbjct 1228840 ACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCGCGCGGAAGA 1228899 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 || || || | | ||||| | || || || | || ||| || |||||||| | Sbjct 1228900 GACGCGACTTCTCGTCGGAGTCTTTGATATATGTTTCCAATAGAAGGCTGTACATTTCTG 1228959 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 |||| || || || ||||| ||||| || || || || || ||||||| Sbjct 1228960 AGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAATGCCCTTGCTTCTG 1229010 >seq59 Length=1347071 Score = 154 bits (170), Expect = 2e-32 Identities = 420/639 (66%), Gaps = 17/639 (3%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || || || || || || | |||||||| ||||| || || || | ||| || || Sbjct 1070661 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 1070720 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| |||| || |||||| | | ||||||||||| || |||| | | ||| Sbjct 1070721 TCCATCCAATCGAAAGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 1070780 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | || ||| || |||||||| ||||| |||||| |||| |||||||| | | Sbjct 1070781 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCAAC 1070840 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 | || || || | | || ||| | |||||| || || || || ||| Sbjct 1070841 GCACACGGGAGTGCATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACGATC 1070900 Query 48090 GATGTTACCGTTTCCTCA-----CTTGGTGGATACAACAAA-TGTTTAAACATTAAACAT 48143 ||| | || ||| || |||| | | || |||| ||| ||| |||||| Sbjct 1070901 GATCTAACGTGTTCTTCGGTAAGCTTGTTC--TTCAGCAAACTGT----ACAATAAACAA 1070954 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 || |||||||| ||||| ||||| || | | ||||| ||| || ||||||||||| ||| Sbjct 1070955 GCGAAATCACAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCG 1071014 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||| || || |||||||| |||||||| || || ||| || || || ||||| ||| Sbjct 1071015 GGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATG 1071074 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT----CGTTGTGTAT 48319 ||||| ||| ||||| ||| || | || || || | | || | | || Sbjct 1071075 CCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGAT-TCAAT 1071133 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 |||| | ||||| | || || ||||| || | || || || || || Sbjct 1071134 CCACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAA 1071193 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||| || || | | ||||| | ||||| |||| || |||||| |||||||| Sbjct 1071194 GAGACGTGCCTTCTCGTCGGAGTCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTC 1071253 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 ||||| || || ||||| || ||||| || ||||| || Sbjct 1071254 TGAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 1071292 >seq9 Length=4860633 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | |||| ||| |||| ||| | || | |||||| || | ||| || Sbjct 1349672 CCTCCTTGATCAACGTATCGGGCAGTGTCGTTAAACACCCGCAACATCGGCACAATCCCA 1349731 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||| ||| |||||| || ||| |||| ||||||||| || || Sbjct 1349732 TTTGAAGTTCCATTTGTACCACGAATATAGCTACCAGTTGCACGAATATTATGAACAGAA 1349791 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||| || || ||| ||| | ||| || || || ||||| || || Sbjct 1349792 ACACCAATTCCCCCAGCAGATTTACTTATAACAGCACATTCCTTTAAAGTATCATAAATT 1349851 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || |||||||| || ||||| || || ||||||||| Sbjct 1349852 CCTTCAATACTGTCTTCTTTCATGCAAATCAGGAAACAGCTA 1349893 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || || || || || ||||| |||||||| | ||| | | || Sbjct 1349991 AGTGCCAGCATTGAACAAGGTAGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAAATG 1350050 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| ||| | || || || || | ||| |||| ||| || ||||| ||||| | Sbjct 1350051 GTATGTTTTAATGACCGACTCAATATCATCCTTG-TGAACTCCCACAGCTACTCGCATTA 1350109 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| ||||| |||||||||||| ||| | | ||||| | || || | |||| Sbjct 1350110 GCATGTGCTGCGGTCTTTCAACCACCTTGCCAGACACCTTCAAGAGATACGACCTCTCCA 1350169 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||| ||||||||||| |||| || |||||| | ||||| || || Sbjct 1350170 AAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCGCGGTCGTATATTAT 1350218 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| || || ||| ||||||| || |||||||||||| | ||||||||||||| | Sbjct 1347150 CAAAACCCTGCGACTGTAAATGTTCGAGGTATATGGTTCAAAGCATTCATTGTTTCCTAG 1347209 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| ||| || |||||||| ||||| || || |||| | | || || | |||| Sbjct 1347210 AATCTGACTTGTTGAAGCAGTAGGCATTGGAGCAACCAGAAGAGAGTTCCTTACTCCATT 1347269 Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320 | || | ||| | | || ||||||||||| |||||||| || | |||| ||| Sbjct 1347270 CTTAGAAATCATTTCTCTCAAATCCTTCCAATCCCATAGATCTGATGGAATCACATTCCA 1347329 Query 77321 AAGATCGTATTGTAGAATTCC 77341 | ||| |||||||| ||| Sbjct 1347330 CATATCAGGTTGTAGAACTCC 1347350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661019709440