Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq59 181 2e-40 seq2 176 6e-39 seq27 161 1e-34 seq9 116 5e-21 >seq59 Length=1347071 Score = 181 bits (200), Expect = 2e-40 Identities = 425/638 (67%), Gaps = 15/638 (2%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || ||||| | |||||||| ||||| || || || | ||| || || Sbjct 1070661 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 1070720 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||| || ||||||| || ||||||||||| || |||| | | ||| Sbjct 1070721 TCCATCCAATCGAAAGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 1070780 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | || ||| || |||||||| |||||| |||||| |||| |||||||| | | Sbjct 1070781 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCAAC 1070840 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||| || || | | || ||| | || ||| || || || |||| ||| Sbjct 1070841 GCACACGGGAGTGCATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACGATC 1070900 Query 46579 GATGTTACTGTTTCCTCA-----CTTGGTGGATGCATCAAA-TGTTTAAACATTAAACAT 46632 ||| | || ||| || |||| | | || |||| ||| ||| |||||| Sbjct 1070901 GATCTAACGTGTTCTTCGGTAAGCTTGTTC--TTCAGCAAACTGT----ACAATAAACAA 1070954 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 || |||||||| ||||| ||||| || | | ||||| ||| || ||||||||||| || Sbjct 1070955 GCGAAATCACAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCATTGGAAAATGTGAGGCCG 1071014 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||| || || || ||||| |||||||| || || ||| || || || ||||| ||| Sbjct 1071015 GGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATG 1071074 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA---TTATGAATC 46809 ||||| || || || ||||| || | || || || | |||| | |||| Sbjct 1071075 CCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGATTCAATC 1071134 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 ||| | ||||| | || || ||||| || | || || || || ||| Sbjct 1071135 CACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAG 1071194 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCT 46929 ||| || || || ||||| | ||| || |||| || |||||| ||||||||| Sbjct 1071195 AGACGTGCCTTCTCGTCGGAGTCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTCT 1071254 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || || ||||| ||||| || ||||| || ||||| || Sbjct 1071255 GAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 1071292 >seq2 Length=5918456 Score = 176 bits (194), Expect = 6e-39 Identities = 426/638 (67%), Gaps = 18/638 (3%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || ||||| | |||||||| ||||| || || || | ||| || || Sbjct 905701 TTCTGGTAGTCTCCTACTCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAAATCAAC 905642 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||||||||||| || ||||||||||| || |||| | | ||| Sbjct 905641 TCCATCCAATCAAACGGATTAGCGACGTTATAAATTTTGCTATATCCGAGAGCAACGATC 905582 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | || ||| || |||||||| |||||| |||||| |||| |||||||| | | Sbjct 905581 AATCGATCAGCTACGAATTCGATATACTGACTCATCAGATCACTGTTCATTCCGACCA-A 905523 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || | || || | | || ||| | || ||| || || || |||| ||| Sbjct 905522 CGCACACGGAGTGCATTGCAGATGAATTCTCGCTCGATATCCACTGCGTCGGATACGATC 905463 Query 46579 GATGTTACTGTTTCCTC-----ACTTGGTGGATGCATCAAA-TGTTTAAACATTAAACAT 46632 ||| | || ||| || |||| | | || |||| ||| ||| |||||| Sbjct 905462 GATCTAACGTGTTCTTCGGTAAGCTTGTT--CTTCAGCAAACTGT----ACAATAAACAA 905409 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 || |||||||| ||||| || || || | | ||||| ||| || | ||||||||| || Sbjct 905408 GCGAAATCACAGTGAAGTCC-TCGTCGCGAGAAATTAGTTCATT-GGAAATGTGAGGCCG 905351 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||| || || || ||||| |||||||| || || ||| || || || ||||| ||| Sbjct 905350 GGCATAAGCCCGCGTTTTTTCAGCCAAAAGATCGCGCAGAACGAGCCGGAGAAGAAGATG 905291 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA---TTATGAATC 46809 ||||| || || || ||||| || | || || || | |||| | |||| Sbjct 905290 CCTTCCACGCAAGCAAAAGCGACGAGACGATCCGCGAAAGAAGAATCACACGATTCAATC 905231 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 ||| | ||||| | || || ||||| || | || || || || ||| Sbjct 905230 CACTCGAGCGCCCACTTGGCTTTACGGGCGACACACGGGACAGTGTCGATCGCGCGGAAG 905171 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCT 46929 ||| || || || |||||| | ||| || |||| || |||||| ||||||||| Sbjct 905170 AGACGTGCCTTCTCGTCGGAATCTTTGATATAAGTTTCTAATAGAAGACTGTACATTTCT 905111 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || || ||||| ||||| || ||||| || ||||| || Sbjct 905110 GAGTGTATGTTCTCAATGGCGATCTGGAAACCGTAGAA 905073 >seq27 Length=2003651 Score = 161 bits (178), Expect = 1e-34 Identities = 428/650 (66%), Gaps = 13/650 (2%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| ||||| |||||||| | |||||||| |||||||| || || | || || || Sbjct 1228364 TTTCTGGTACTCACCTACTCTCTTCTCGAAGAAATTAGTCTTACCCTGCAGCGAGATTAA 1228423 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| |||| |||||||| |||||| |||||||| | | || | | | Sbjct 1228424 CTCCATCCAATCGAACGGATTCACAACATTGTAAATTTTGTGATGACCGAGAGCGCCGAG 1228483 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || || ||| ||||||||||| |||||| |||| | || | |||||||| | | Sbjct 1228484 CAATCGATCAGCAACGAATTCGATATACTGGCTCATTAAATCGCTGTTCATTCCGACCAA 1228543 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | || || || | | || || | || ||| || || || || || Sbjct 1228544 CGCGCATGGGAGCGCGTTGCAGATGAATTCCCGCTCTATATCCACTGCGTCGATTACGAT 1228603 Query 46578 CGATGTTACTGTTTCCTC----ACTTGGTGGATGCATCAAA-TGTTTAAACATTAAACAT 46632 |||| ||| ||| || | | ||| || | ||| ||| ||| |||||| Sbjct 1228604 CGATCGAACTTGTTCTTCGGAAAGCTTGTG-ATTTAGAAAACTGTATAA----TAAACAA 1228658 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 || ||||| || ||||| ||||| || | | ||||| |||||| ||||||||||| || Sbjct 1228659 GCGAAATCGCAGTGAAGTCCTTCGTCGCGAGAAATTAGTTCGTTTGAAAATGTGAGGCCG 1228718 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||| || ||||| ||||| ||||| || || || ||| || || || ||||| ||| Sbjct 1228719 GGCATAAGACCACGTTTTTTCAGCCAGAAGATCGCACAGAACGAGCCGGAGAAGAAGATG 1228778 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT---TATGAATC 46809 |||||||| || || ||||| || | ||| || | || || | | |||| Sbjct 1228779 CCTTCTACGCAAGCAAACGCGACGAGGCGTTCTGCGAATGAAGCTTCGTCTGATTCAATC 1228838 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 |||| | ||||| | ||| || ||||| || | ||| || || || ||| Sbjct 1228839 CACCGCAGCGCCCACTGAGCTTTCCGGGCAACACATGGGACTGTATCGATCGCGCGGAAG 1228898 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCT 46929 ||| || || || ||||| | |||||| || | || ||| || ||||||||| Sbjct 1228899 AGACGCGACTTCTCGTCGGAGTCTTTGATATATGTTTCCAATAGAAGGCTGTACATTTCT 1228958 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979 || || ||||| || || || ||||| || || || || |||||||| Sbjct 1228959 GAGTGTATGTTCTCGATTGCGATCTGGAAGCCATAGAATGCCCTTGCTTC 1229008 >seq9 Length=4860633 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | |||| |||||||| ||| | || | |||||| || | ||| || Sbjct 1349672 CCTCCTTGATCAACGTATCGGGCAGTGTCGTTAAACACCCGCAACATCGGCACAATCCCA 1349731 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||| ||| |||||| || ||| ||||||||||||| || ||| Sbjct 1349732 TTTGAAGTTCCATTTGTACCACGAATATAGCTACCAGTTGCACGAATATTATGAACAGAA 1349791 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || |||| || | |||||| || || || ||||| || Sbjct 1349792 ACACCAATTCCCCCAGCAGATTTACTTATAACAGCACATTCCTTTAAAGTATCATAAATT 1349851 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || ||||| || || ||||| || || ||||||||| Sbjct 1349852 CCTTCAATACTGTCTTCTTTCATGCAAATCAGGAAACAGCTA 1349893 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| ||||| ||||| || |||||||| ||||| | ||| | | || Sbjct 1349991 AGTGCCAGCATTGAACAAGGTAGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAAATG 1350050 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| ||| || | || ||||| | ||| |||| ||| ||||| || ||||| | Sbjct 1350051 GTATGTTTTAATGACCGACTCAATATCATCCTTG-TGAACTCCCACAGCTACTCGCATTA 1350109 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| ||||| |||| ||| || ||| | | ||||| | || || | |||| Sbjct 1350110 GCATGTGCTGCGGTCTTTCAACCACCTTGCCAGACACCTTCAAGAGATACGACCTCTCCA 1350169 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||| ||||||||||| |||| || |||||| | ||||| || || Sbjct 1350170 AAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCGCGGTCGTATATTAT 1350218 Score = 102 bits (112), Expect = 1e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| || || ||| ||||||| || |||||||||||| | ||||||||||||| | Sbjct 1347150 CAAAACCCTGCGACTGTAAATGTTCGAGGTATATGGTTCAAAGCATTCATTGTTTCCTAG 1347209 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 ||| ||| ||||||||||| ||||| || || |||| | | || || | |||| Sbjct 1347210 AATCTGACTTGTTGAAGCAGTAGGCATTGGAGCAACCAGAAGAGAGTTCCTTACTCCATT 1347269 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915 | || | ||| | | || ||||||||||| ||||||||||| | |||| ||| Sbjct 1347270 CTTAGAAATCATTTCTCTCAAATCCTTCCAATCCCATAGATCTGATGGAATCACATTCCA 1347329 Query 75916 GAGATCGTATTGTAGAATTCC 75936 | ||| |||||||| ||| Sbjct 1347330 CATATCAGGTTGTAGAACTCC 1347350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926415134720