Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31] 896 sequences; 295,462,401 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq321 453 1e-122 seq43 96.9 4e-15 >seq321 Length=132638 Score = 453 bits (502), Expect = 1e-122 Identities = 495/650 (76%), Gaps = 8/650 (1%) Strand=Plus/Minus Query 183377 TCATC-TCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATC 183435 ||||| |||||||| || ||||| |||| || || || | || ||||| || ||| Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993 Query 183436 TGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTC 183495 |||||||||||||| | ||||||||| | || || || |||||||| |||| | || Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933 Query 183496 TTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGT 183555 | |||||| | |||| || || ||||||||||||||||||||| | || |||| Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873 Query 183556 CTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCT 183615 || ||||||||||||||||| |||||| ||| || |||||||| ||||| || ||| Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813 Query 183616 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGG--TA 183673 || ||| || |||| ||| |||||||||| |||| |||||||||||| | || || Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 |||| | || || |||| ||| |||| ||||| || |||||||||||||| ||||| | Sbjct 86752 TCAG--GTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATC 86695 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | ||||||||| | || || |||||||| ||||| ||||| || |||||||| ||||| | Sbjct 86694 CATTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 86635 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 |||| |||| || | || | | | || | |||||||| || || || || | Sbjct 86634 GTTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAA 86576 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| ||||||||||| ||||| || ||||| || || ||||||||||| || ||| Sbjct 86575 GGTTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTT 86516 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || |||||||||| |||||| || ||||| |||||||| || |||||||| | Sbjct 86515 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTG 86456 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTT-AGCA 184021 ||||||||||| || || || |||||||| |||||| | ||| || |||| Sbjct 86455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTGAGCA 86406 >seq43 Length=1752904 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 171041 CTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGT 171100 ||| |||||||||||||| || || |||||||||||||| ||||| ||| |||||||| Sbjct 1240421 CTACTCGTGTCGTGCTGGGGCGTGCTCGACCTGTGCTGGAAAAATCGAGTCCGGTTCTGT 1240480 Query 171101 TGATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGAC 171160 |||||| |||||| ||| ||||| || || | | || | ||||| | || || Sbjct 1240481 TGATCAGTCCGATGGATCCTTCCTCGACGAAGGACTCATGTCAAAGGGTTTTGTGCTCAC 1240540 Query 171161 CTGCGTCTCATATCCTAC 171178 ||||||| | || || || Sbjct 1240541 CTGCGTCGCGTACCCCAC 1240558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622063432811520