Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xerophyta_20viscosa_20[genbank_20GCA_5F002076135.1_202017-03-31]
896 sequences; 295,462,401 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq321 453 1e-122
seq43 96.9 4e-15
>seq321
Length=132638
Score = 453 bits (502), Expect = 1e-122
Identities = 495/650 (76%), Gaps = 8/650 (1%)
Strand=Plus/Minus
Query 183377 TCATC-TCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATC 183435
||||| |||||||| || ||||| |||| || || || | || ||||| || |||
Sbjct 87052 TCATCCTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTCTACCCGATC 86993
Query 183436 TGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTC 183495
|||||||||||||| | ||||||||| | || || || |||||||| |||| | ||
Sbjct 86992 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTAATTGTT 86933
Query 183496 TTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGT 183555
| |||||| | |||| || || ||||||||||||||||||||| | || ||||
Sbjct 86932 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 86873
Query 183556 CTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCT 183615
|| ||||||||||||||||| |||||| ||| || |||||||| ||||| || |||
Sbjct 86872 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86813
Query 183616 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGG--TA 183673
|| ||| || |||| ||| |||||||||| |||| |||||||||||| | || ||
Sbjct 86812 GTTTTCTTGATCTACCCTATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTTTAGGAATA 86753
Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733
|||| | || || |||| ||| |||| ||||| || |||||||||||||| ||||| |
Sbjct 86752 TCAG--GTACTTTCAACTTCATGATTGTATTCCAGGCGGAGCACAACATCCTTATGCATC 86695
Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793
| ||||||||| | || || |||||||| ||||| ||||| || |||||||| ||||| |
Sbjct 86694 CATTCCACATGTTAGGAGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 86635
Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852
|||| |||| || | || | | | || | |||||||| || || || || |
Sbjct 86634 GTTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTAATGAA 86576
Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912
||||||| ||||||||||| ||||| || ||||| || || ||||||||||| || |||
Sbjct 86575 GGTTACAGATTCGGTCAAGAGGAAGAAACTTACAATATCGTAGCTGCTCATGGTTATTTT 86516
Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972
|| || |||||||||| |||||| || ||||| |||||||| || |||||||| |
Sbjct 86515 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCCCTACACTTCTTTTTG 86456
Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTT-AGCA 184021
||||||||||| || || || |||||||| |||||| | ||| || ||||
Sbjct 86455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTGAGCA 86406
>seq43
Length=1752904
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 171041 CTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGT 171100
||| |||||||||||||| || || |||||||||||||| ||||| ||| ||||||||
Sbjct 1240421 CTACTCGTGTCGTGCTGGGGCGTGCTCGACCTGTGCTGGAAAAATCGAGTCCGGTTCTGT 1240480
Query 171101 TGATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGAC 171160
|||||| |||||| ||| ||||| || || | | || | ||||| | || ||
Sbjct 1240481 TGATCAGTCCGATGGATCCTTCCTCGACGAAGGACTCATGTCAAAGGGTTTTGTGCTCAC 1240540
Query 171161 CTGCGTCTCATATCCTAC 171178
||||||| | || || ||
Sbjct 1240541 CTGCGTCGCGTACCCCAC 1240558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622063432811520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |