Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 5e-14 seq6 89.7 6e-13 >seq9 Length=159769782 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || |||||||| | || | ||| || | |||| | || | ||||| |||| ||| ||| Sbjct 15725525 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAGGAACAATTCCA 15725466 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| || || ||||| || ||| | ||||| |||||| || ||| Sbjct 15725465 TTTGATGATCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGGATATTATGAACTGAG 15725406 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| |||| || || ||| | || |||||||| Sbjct 15725405 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGGGTTTCATAGATT 15725346 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || || ||||| ||||| | ||||||||||| Sbjct 15725345 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 15725305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | || || ||||| || |||||||| | || | |||| | Sbjct 15725205 GTGCCAGCATTGAAAAGCGTCGGTGAAGCATGAGTAAACCAGCGCTGGGACATCAGATGG 15725146 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 |||||| ||| || || || || || | ||| || || || | || || | |||||| Sbjct 15725145 TACGTCCTGATGGCAGACTCGATGTCTTCCTTG-TGTATCCCCAGTGAAACCCTCATTAA 15725087 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||| || |||||||||| ||| | | |||| || ||| || | |||| Sbjct 15725086 CATGTGCTGCGGCCTTTCAACGACCTTACCATCAAGCTTCAACAGGTAAGACCTCTCCAG 15725027 Query 54604 AGTTTTAAAACCAAAATAGTTGTA 54627 |||||| || ||||| |||| ||| Sbjct 15725026 AGTTTTGAAGCCAAAGTAGTCGTA 15725003 >seq6 Length=174033170 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||| || |||||||| | || | |||||||| || ||||| Sbjct 122043166 CAGGCGAAATCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 122043107 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| || || ||||| || |||||||| |||| |||| || || || || ||||| Sbjct 122043106 CCCGGCATGAGCCCGCGCTTCTTCAGCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 122043048 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAA 24279 || || || || || ||||||| Sbjct 122043047 GATGCCCTCGACGCAGGCGAAGGCAA 122043022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || |||||||| | || | ||| || | |||| | |||| ||||| || | ||| ||| Sbjct 84115636 CCACCCTGATCAACATAACGAGCAGTATCATTAAAGACTCGTAACATAGGCACAATTCCA 84115695 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| || || || || || ||| | |||||||||||| || ||| Sbjct 84115696 TTTGATGTTCCATTTGTTCCTCGTATGTAACTCCCAGTAGCACGAATATTATGAACTGAG 84115755 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| |||| || || || | || |||||||| Sbjct 84115756 ACACCAATTCCTCCAGCTGATTTGCTTATTACAGCACACTCCTTCAGGGTTTCATAGATT 84115815 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || || ||||| ||||| | ||||||||||| Sbjct 84115816 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 84115856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719618454160