Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4 82.4 9e-11 seq2 82.4 9e-11 >seq4 Length=246994605 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || || | ||| || |||| || || || || |||||||| || || || |||||| Sbjct 19759954 TGAGCAATCATATATGTCAAAAGAGAATATGATGCGATGTTGAATGGAACACCAAGCCCC 19760013 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 ||||| | ||||| || |||| ||||||||| ||||||||| | |||| || |||||| Sbjct 19760014 ATGTCTGCAGAGCGTTGATACATCTGGCAGGATAGCTCCCCGTTCTCCACATAAAACTGG 19760073 >seq2 Length=244442276 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || || | |||||| ||||| || || || || |||||||| || || || |||||| Sbjct 228280648 TGAGCAATCATGTATGTCAGGAGAGAATATGATGCGATGTTGAATGGAACACCAAGCCCC 228280589 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 ||||| | ||||| || |||| |||||| || |||||||| |||| ||||||||| Sbjct 228280588 ATGTCTGCAGAGCGTTGATACATCTGGCAAGATAGCTCCCCATTTTCCACATAGAACTGG 228280529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590074830618680