Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 113 1e-19 seq9 102 2e-16 seq6 96.9 7e-15 >seq2 Length=244442276 Score = 113 bits (124), Expect = 1e-19 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || | |||||||| ||||| ||||| ||||| || ||||| | ||||| Sbjct 34131429 GTACTCCCCGACGCGCTTCTCAAAGAAGTTAGTCTTGCCCTGCAGGGAAATGAGCTCCAT 34131370 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| || ||||||| | ||| | Sbjct 34131369 CCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCCTGTGCCCCAGCGCCATGAGCAGGCG 34131310 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| |||||||| Sbjct 34131309 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACCAGCGCGAC 34131250 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 ||| |||| || || ||| ||| || | ||| Sbjct 34131249 GGGGAGCG-CGTCGCAAACGAACTCACGCTC 34131220 >seq9 Length=159769782 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || ||||| | ||||| |||||||| ||||||| || || || | || || Sbjct 15724994 GATTTCGACTACGACTACTTTGGCTTCAAAACTCTGGAGAGGTCTTACCTGTTGAAGCTT 15725053 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 ||||| ||| |||| ||| | ||||||||||| ||| | || | | ||||| ||| Sbjct 15725054 GATGGTAAGGTCGTTGAAAGGCCGCAGCACATGTTAATGAGGGTTTCACTGGGGATACAC 15725113 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||| ||||| ||| | || |||||| || | | ||| | |||||| | || Sbjct 15725114 AAGGAAGACATCGAGTCTGCCATCAGGACGTACCATCTG-ATGTCCCAGCGCTGGTTTAC 15725172 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| |||||||||| ||||| || || || Sbjct 15725173 TCATGCTTCACCGACGCTTTTCAATGCTGGCAC 15725205 Score = 89.7 bits (98), Expect = 1e-12 Identities = 299/455 (66%), Gaps = 18/455 (4%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| || |||| | ||||| || ||||||||||| ||| || || || | ||||| Sbjct 30987752 GTAGTCACCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCATCAGCGAGATGAGCTCCAT 30987693 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| || |||| |||||||| ||| | | |||| ||| | ||| | Sbjct 30987692 CCAGTCGAAGGGATTGGTCACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGGCG 30987633 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| ||||| || | ||||||| ||||| | | || | || |||| ||||||||| Sbjct 30987632 GTCGGCCACGAATTCAATGTACTGGCTCATGAGATCCCCGTTCATGCCGACGAGCGCGAC 30987573 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 || || | || || | | ||| |||| ||| | | ||||||| || || || Sbjct 30987572 AGGGAG-GGCGTCGCAGACGAACTCGCGCTCGATGTCGACAGCGTCTGCGACGATCTCGC 30987514 Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCG-- 157553 | || | || || | ||| | || |||| ||| ||||| || || || || Sbjct 30987513 GTACGCGGGCCTCGTCG-AGCTTGTTGCGGAGAAGCTCGTAGAGGA----GGCAGGCGAA 30987459 Query 157554 -TGGC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTT 157608 | | ||| || || || || | || |||||| ||| | ||| | | || | | Sbjct 30987458 ATCACAGTGGAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 30987399 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 || | | | |||||||| |||||| ||||||||||||| ||||| ||| | ||| Sbjct 30987398 GAGC--CCG-CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGACCCCGAGAAGAATATGCC 30987342 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 ||| | |||| |||| | || | | ||| |||| Sbjct 30987341 CTCGACGCAGGCGAAGGCAACGATGCGCTCAGCGA 30987307 >seq6 Length=174033170 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||||||||||||||| || || || | |||||||| ||||| |||||| Sbjct 122043436 TTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTTG 122043377 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 | |||||||| ||| | | |||| ||| | ||| | ||| ||||| |||| | Sbjct 122043376 GTCACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGGCGGTCGGCCACGAACTCG 122043317 Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGCCGACG-A 157452 ||||||| ||||| | | || | || |||| ||| | ||| || || | || || | Sbjct 122043316 ATGTACTGGCTCATGAGGTCCCCGTTCATGCCGACGAGGGAGACAGGGAG-GGCGTCGCA 122043258 Query 157453 AATGAATTCGCACTC 157467 | ||| |||| ||| Sbjct 122043257 GACGAACTCGCGCTC 122043243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073762726712256