Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 2e-14 seq9 87.8 2e-12 >seq6 Length=174033170 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||||||||||||||| |||||||| | || | ||||| || || ||||| Sbjct 122043166 CAGGCGAAATCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 122043107 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || |||||||| |||| ||| || || || |||||| Sbjct 122043106 CCCGGCATGAGCCCGCGCTTCTTCAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 122043047 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAA 33726 || || || || ||| || ||||||| Sbjct 122043046 ATGCCCTCGAC-GCAGGCGAAGGCAA 122043022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || |||||||| | || | ||| || | |||| | |||| ||||| || | ||| || Sbjct 84115636 CCACCCTGATCAACATAACGAGCAGTATCATTAAAGACTCGTAACATAGGCACAATTCCA 84115695 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 |||||| | ||||| || || || || | ||| | |||||||||||| || ||| Sbjct 84115696 TTTGATGTTCCATTTGTTCCTCGTATGTAACTCCCAGTAGCACGAATATTATGAACTGAG 84115755 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| ||||| || || ||| |||| || || || | || |||||||| Sbjct 84115756 ACACCAATTCCTCCAGCTGATTTGCTTATTACAGCACACTCCTTCAGGGTTTCATAGATT 84115815 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 || || ||||| ||||| ||||| | ||||||||||| Sbjct 84115816 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 84115856 >seq9 Length=159769782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || |||||||| | || | ||| || | |||| | || | ||||| |||| ||| || Sbjct 15725525 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAGGAACAATTCCA 15725466 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 |||||| ||||| || || ||||| | ||| | ||||| |||||| || ||| Sbjct 15725465 TTTGATGATCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGGATATTATGAACTGAG 15725406 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 15725405 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGGGTTTCATAGATT 15725346 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 || || ||||| ||||| ||||| | ||||||||||| Sbjct 15725345 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 15725305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815497983760