Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 5e-15 seq6 96.9 5e-15 seq2 87.8 2e-12 seq1 84.2 3e-11 >seq9 Length=159769782 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || |||||||| | || | ||| || | |||| | || | ||||| |||| ||| ||| Sbjct 15725525 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAGGAACAATTCCA 15725466 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || |||| ||||| || || ||||| || ||| | ||||| |||||| || ||| Sbjct 15725465 TTTGATGATCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGGATATTATGAACTGAG 15725406 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 15725405 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGGGTTTCATAGATT 15725346 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || || ||||| ||||| | ||||||||||| Sbjct 15725345 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 15725305 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | || || ||||| || |||||||| | || | |||| | Sbjct 15725205 GTGCCAGCATTGAAAAGCGTCGGTGAAGCATGAGTAAACCAGCGCTGGGACATCAGATGG 15725146 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 |||||| || || || || || || | ||| || || || | || || | |||||| Sbjct 15725145 TACGTCCTGATGGCAGACTCGATGTCTTCCTTG-TGTATCCCCAGTGAAACCCTCATTAA 15725087 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| || |||||||||| ||| | | ||||||| ||| || | |||| Sbjct 15725086 CATGTGCTGCGGCCTTTCAACGACCTTACCATCAAGCTTCAACAGGTAAGACCTCTCCAG 15725027 Query 66635 AGTTTTAAAACCAAAATAGTTGTA 66658 |||||| || ||||| |||| ||| Sbjct 15725026 AGTTTTGAAGCCAAAGTAGTCGTA 15725003 >seq6 Length=174033170 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || |||||||| | || | ||| || | |||| | |||| ||||| || | ||| ||| Sbjct 84115636 CCACCCTGATCAACATAACGAGCAGTATCATTAAAGACTCGTAACATAGGCACAATTCCA 84115695 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || || || || ||| | |||||||||||| || ||| Sbjct 84115696 TTTGATGTTCCATTTGTTCCTCGTATGTAACTCCCAGTAGCACGAATATTATGAACTGAG 84115755 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || ||| |||| || || || | || |||||||| Sbjct 84115756 ACACCAATTCCTCCAGCTGATTTGCTTATTACAGCACACTCCTTCAGGGTTTCATAGATT 84115815 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || || ||||| ||||| | ||||||||||| Sbjct 84115816 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 84115856 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||| || |||||||| | || | |||||||| || ||||| Sbjct 122043166 CAGGCGAAATCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 122043107 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| || || ||||| || |||||||| |||| |||| || || || || ||||| Sbjct 122043106 CCCGGCATGAGCCCGCGCTTCTTCAGCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 122043048 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAA 36302 || || || || || ||||||| Sbjct 122043047 GATGCCCTCGACGCAGGCGAAGGCAA 122043022 >seq2 Length=244442276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || |||||||| | || | ||| || | |||| | || | ||||| ||| ||| ||| Sbjct 193849095 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCCA 193849036 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||| || || | ||||| |||||| || ||| Sbjct 193849035 TTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGAG 193848976 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 193848975 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGATT 193848916 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || | ||||| ||||| | ||||||||||| Sbjct 193848915 CCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 193848875 >seq1 Length=307041717 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || |||||||| | || | ||| || | |||| | || | ||||| ||| ||| ||| Sbjct 17821910 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACATAACATAAGAACAATTCCA 17821851 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||| || || | ||||| |||||| || ||| Sbjct 17821850 TTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGAG 17821791 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 17821790 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGATT 17821731 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 | ||| || | ||||| ||||| | ||||||||||| Sbjct 17821730 CTCTCAATGTTGTCATCTTTCATGCATATAAGAAAACAGCT 17821690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170603348280