Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq4 87.8 2e-12 >seq5 Length=223902240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||| || || ||||| || ||| | |||| | | Sbjct 84632624 CGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCG 84632683 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||| || || ||||| || ||||| ||||| || ||| Sbjct 84632684 TCCTCAAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTG 84632743 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | || ||||||||| | ||| | Sbjct 84632744 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 84632803 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| ||||| || || || ||||| Sbjct 84632804 GTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 84632838 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||| || || ||||| || ||| | |||| | | Sbjct 84632396 CGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCG 84632455 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||| || || ||||| || || || ||||| || ||| Sbjct 84632456 TCCTCAAGCTGCTTTCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 84632515 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | | ||||||||| | ||| | Sbjct 84632516 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAAGACTCCACCTCGAGGGTGATA 84632575 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 84632576 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 84632610 >seq4 Length=246994605 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || ||||| | || ||| || || ||||| || || | || ||| Sbjct 242113141 ACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTCCC 242113082 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || | ||| || || ||| |||| ||||||||||| || || || ||||| || || Sbjct 242113081 ATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCAGGTGGGATGCCCTCCTT 242113022 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| ||| || | | || | ||||| | || ||||||||||| ||| | Sbjct 242113021 GTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGGACTCCACCTCAAGGGTGAT 242112962 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || || || || ||||| Sbjct 242112961 TGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 242112926 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||| || || ||||| || || || ||||| || ||| Sbjct 242135870 TCCTCCAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGTGGAATGCCCTCCTTG 242135811 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | || ||||||||||| ||| | | Sbjct 242135810 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATC 242135751 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 242135750 GTCTTGCCAGTAAGTGTCTTCACGAAGATCTGCAT 242135716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062344386400