Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 113 6e-20 seq9 102 1e-16 seq2 93.3 6e-14 seq1 87.8 3e-12 >seq6 Length=174033170 Score = 113 bits (124), Expect = 6e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||||||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 122043166 CAGGCGAAATCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 122043107 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || |||||||| |||| |||| || || || || ||||| Sbjct 122043106 CCCGGCATGAGCCCGCGCTTCTTCAGCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 122043048 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| |||||||| || | ||| Sbjct 122043047 GATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 122043012 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | || | ||| || | |||| | |||| ||||| || | ||| ||| Sbjct 84115636 CCACCCTGATCAACATAACGAGCAGTATCATTAAAGACTCGTAACATAGGCACAATTCCA 84115695 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || || || || ||| | |||||||||||| || ||| Sbjct 84115696 TTTGATGTTCCATTTGTTCCTCGTATGTAACTCCCAGTAGCACGAATATTATGAACTGAG 84115755 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| |||| || || || | || |||||||| Sbjct 84115756 ACACCAATTCCTCCAGCTGATTTGCTTATTACAGCACACTCCTTCAGGGTTTCATAGATT 84115815 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| | ||||||||||| Sbjct 84115816 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 84115856 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | || || || || || |||||||| | |||| |||| | Sbjct 84115953 GTGCCAGCGTTGAAAAGTGTTGGTGATGCATGTGTAAACCAGCGCTGGGACATCAGATGG 84116012 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 |||||| ||| || || || || || | ||| || ||||| || | || | ||| | Sbjct 84116013 TACGTCCTAATGGCAGACTCAATGTCTTCCTTG-TGTATTCCCACTGAAACCCTCATCAG 84116071 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||||| ||| | | ||||| | |||||| | |||| Sbjct 84116072 CATGTGCTGAGGCCTTTCAACGACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCAG 84116131 Query 80514 AGTTTTAAAACCAAAATAGT 80533 |||||| || ||||| |||| Sbjct 84116132 AGTTTTGAAGCCAAAGTAGT 84116151 >seq9 Length=159769782 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | || | ||| || | |||| | || | ||||| |||| ||| ||| Sbjct 15725525 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAGGAACAATTCCA 15725466 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || |||| ||||| || || ||||| || ||| | ||||| |||||| || ||| Sbjct 15725465 TTTGATGATCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGGATATTATGAACTGAG 15725406 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 15725405 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGGGTTTCATAGATT 15725346 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| | ||||||||||| Sbjct 15725345 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 15725305 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | || || ||||| || |||||||| | |||| |||| | Sbjct 15725205 GTGCCAGCATTGAAAAGCGTCGGTGAAGCATGAGTAAACCAGCGCTGGGACATCAGATGG 15725146 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 |||||| || || || || || || | ||| || || || | | || | |||||| Sbjct 15725145 TACGTCCTGATGGCAGACTCGATGTCTTCCTTG-TGTATCCCCAGTGAAACCCTCATTAA 15725087 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| || |||||||||| ||| || | ||||||| |||||| | |||| Sbjct 15725086 CATGTGCTGCGGCCTTTCAACGACCTTACCATCAAGCTTCAACAGGTAAGACCTCTCCAG 15725027 Query 80514 AGTTTTAAAACCAAAATAGTTGTA 80537 |||||| || ||||| |||| ||| Sbjct 15725026 AGTTTTGAAGCCAAAGTAGTCGTA 15725003 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | || | ||| || | |||| | || | ||||| ||| ||| ||| Sbjct 145279541 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCCA 145279600 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || ||||| || || | |||| | |||| || ||| Sbjct 145279601 TTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACAGACATTATGAACTGAG 145279660 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 145279661 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGATT 145279720 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||| | ||||| ||||| | ||||||||||| Sbjct 145279721 CCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 145279761 >seq2 Length=244442276 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | || | ||| || | |||| | || | ||||| ||| ||| ||| Sbjct 193849095 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCCA 193849036 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || ||||| || || | ||||| |||||| || ||| Sbjct 193849035 TTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGAG 193848976 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 193848975 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGATT 193848916 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||| | ||||| ||||| | ||||||||||| Sbjct 193848915 CCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 193848875 >seq1 Length=307041717 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | || | ||| || | |||| | || | ||||| ||| ||| ||| Sbjct 17821910 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACATAACATAAGAACAATTCCA 17821851 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || ||||| || || | ||||| |||||| || ||| Sbjct 17821850 TTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGAG 17821791 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 17821790 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGATT 17821731 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 | ||| ||| | ||||| ||||| | ||||||||||| Sbjct 17821730 CTCTCAATGTTGTCATCTTTCATGCATATAAGAAAACAGCT 17821690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266402777880