Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 5e-12 >seq4 Length=246994605 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| |||| ||||||||||| || | ||||| |||| | || || |||| || Sbjct 242135697 CACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGCAAGCGTGCGCCCGTCCTC 242135638 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || |||||||||||||| | ||||| || || | || | || || || || Sbjct 242135637 GAGCTGCTTGCCGGCAAAAATGAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 242135578 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | ||||| || ||| || || || |||||| || | || ||||| || Sbjct 242135577 GATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTGATAGTCTT 242135518 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| ||||| || || ||||| Sbjct 242135517 GCCAGTCAGAGTCTTCACGAAGATCTGCAT 242135488 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||| |||| ||||||||||| || | |||||||| | | || ||| | || || Sbjct 242113363 CACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGTCCATCCTC 242113304 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || ||||||||||| || | ||||| || || | ||| | || || || || Sbjct 242113303 CAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 242113244 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | ||||| || ||| || || || ||| || || | || || || || Sbjct 242113243 GATCTTGGCCTTGACATTGTCAATGGTATCTGAAGACTCCACCTCAAGAGTGATGGTCTT 242113184 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||||||||| || ||||| Sbjct 242113183 GCCAGTAAGGGTTTTCACAAAGATCTGCAT 242113154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368358999486