Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 190 3e-43 seq6 168 1e-36 seq9 141 1e-28 >seq2 Length=244442276 Score = 190 bits (210), Expect = 3e-43 Identities = 406/591 (69%), Gaps = 23/591 (4%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || ||| |||| | | |||||||| | ||||| ||||| ||| |||| Sbjct 34130564 CCATGTTCCCGATCCGGTACCCGCAGATTTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 34130623 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA---GACTCGTT 125109 | ||||| | ||| ||||| || || ||| |||| | | | ||||| | | | | Sbjct 34130624 TCTGGACTGCCGAGGAGGTGGACCTCTCCGCGGACGCGCGCCACTGGGACGCGGCCCTCT 34130683 Query 125110 TGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 | || ||||| | || || || ||| | | |||||||| |||| |||||| | Sbjct 34130684 CCCCCGAC---GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACG 34130740 Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGG 125226 | ||||| ||| || || | || ||| | || | || ||| || | |||| Sbjct 34130741 GCATCGTGCTCGAGAACCTCGCCTCCCGCTTCATGTCC---GATGTCCAGGTCGCCGAGG 34130797 Query 125227 TGTCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCT 125285 | || || |||||||| ||||||||| || |||||| | |||||||| |||||||| Sbjct 34130798 CG-CGCGCCTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCGGAGATGTACTCG 34130856 Query 125286 ACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAAT 125344 ||| | || | ||||| |||||| ||| || || || ||||| ||| || Sbjct 34130857 CTGCTGCTCGAGACCTACATCCGCGATG-GCACCGAGAAGGACCGCCTCTTCCGCGCCAT 34130915 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 ||| || || || | |||| ||||| | |||| || || |||||||| | || Sbjct 34130916 CGAAACCGTCCCCGCCGTACGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGG 34130975 Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 || ||| | |||| | || || || |||||| ||| |||||||||||||| | Sbjct 34130976 GGAGCGCTTTG----CCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCT 34131031 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||| | || ||| |||||||| ||||||||||||||||| |||||||| || || || Sbjct 34131032 CGGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACT 34131090 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | ||| ||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 34131091 TTCTCTAATGAGCTCATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGCC 34131141 >seq6 Length=174033170 Score = 168 bits (186), Expect = 1e-36 Identities = 384/566 (68%), Gaps = 25/566 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| | ||||| ||||| ||| ||||| ||||||| ||| ||||| || || Sbjct 122042613 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTTGACCTC 122042672 Query 125079 TC---CAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTAT 125134 || | | | || | || ||||| || || | | || ||||| | || || Sbjct 122042673 TCTGCCGACGCCCGGCAC---TGGGACGAGGCGCTGTCCCCCGAC-GAGCGCCACTTCAT 122042728 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||| | | |||||||| |||| |||||| || ||||| ||| || || | | Sbjct 122042729 CTCTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTC 122042788 Query 125195 ACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 || ||| | || || || | | |||| | | ||| ||||| ||||| ||| Sbjct 122042789 CCGCTTCATGTCC-GACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCG 122042847 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 || |||||| | |||||||| |||||||| ||| | || | ||||| ||||| Sbjct 122042848 CCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGA-- 122042905 Query 125314 CGCAACGT----AAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 | |||| || || ||||| ||| ||||| |||||||| | | || Sbjct 122042906 --CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGATACGGTGCCCGCGGTCCGGCGC 122042963 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTTCGTACGCCGACAGACT 125428 ||||| | |||| || || |||||||| | || || ||||| |||| | || Sbjct 122042964 AAGGCGGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCG----CCGAGCGCCT 122043019 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTT 125487 || || |||||| ||| |||||||||||||| ||||| | || ||| |||||||||| Sbjct 122043020 CGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTTT 122043078 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||| ||||||||||| |||||||| || || || | |||||| | || || || | Sbjct 122043079 GGCTGAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCG 122043138 Query 125548 ACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| ||||| || || ||| Sbjct 122043139 ACGAGGGCCTGCACTGCGATTTCGCC 122043164 >seq9 Length=159769782 Score = 141 bits (156), Expect = 1e-28 Identities = 375/562 (67%), Gaps = 17/562 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| | ||||| ||||| ||||||||| ||||||| || ||||| || || Sbjct 30986913 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACGGCGGAGGAGGTTGACCTC 30986972 Query 125079 TC---CAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTAT 125134 || | | | || | || ||||| || || | | || ||||| | || || Sbjct 30986973 TCTGCCGACGCCCGGCAC---TGGGACGAGGCGCTGTCCCCCGAC-GAGCGGCACTTCAT 30987028 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||| | | |||||||| || | |||||| || ||||| ||| || || | Sbjct 30987029 CTCCCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTGCTCGAGAACCTCGCTTC 30987088 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 || ||| || || | | |||| | | ||| ||||| ||||| ||| Sbjct 30987089 CCGCTTCATGACCGACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGC 30987148 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 || |||||| | |||||||| ||||| || ||| | || | ||||| ||||| || Sbjct 30987149 CATCGAGAACATCCACTCGGAGATGTATTCGCTGCTGCTCGAGACCTACATCCGCGA-CC 30987207 Query 125315 GCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 | || || || || || ||| |||||||| ||||| | | || |||| Sbjct 30987208 ACGTCGAGAAGGACCGCCTGTTCCGCGCCATCGACACCGTGCCCGCGGTCCGGCGCAAGG 30987267 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTTCGTACGCCGACAGACTGGTG 125432 || | |||| || || |||||||| | || || ||||| | || | | || Sbjct 30987268 CTGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCG----CTGAGCGCATCGTT 30987323 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCT 125491 || |||||| ||| |||||||| ||||| ||||| | || |||| ||||||| ||||| Sbjct 30987324 GCCTTCGCCTGCGTCGAGGGCATATTCTTCTCGGGGTCCTTCTGCG-CCATCTTCTGGCT 30987382 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||||||||||| |||||||| || || || | |||||| | || || || || || Sbjct 30987383 CAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGATGA 30987442 Query 125552 GGGCCTACACTGTGACTTTGCC 125573 |||||| |||||||| || ||| Sbjct 30987443 GGGCCTCCACTGTGATTTCGCC 30987464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056726714920