Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 120 7e-22 seq5 105 2e-17 seq8 84.2 5e-11 seq2 84.2 5e-11 >seq4 Length=246994605 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || ||||| | || || | ||||| || || || || ||||||||| Sbjct 242135450 TCCTTCTGAATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCAAAA 242135391 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||| ||| || || ||||| || || || || ||||| ||||| || || || || Sbjct 242135390 ATGAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 242135331 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || || || ||||| || || |||||||| ||||| || || || || Sbjct 242135330 TCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTTCCAGTGAGGGTCTTGACG 242135271 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 242135270 AAGATCTGCAT 242135260 Score = 105 bits (116), Expect = 2e-17 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || || || | || || | || || || || || || |||||||| Sbjct 242135906 TCCTTCTGGATGTTGTAATCTGCAAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAG 242135847 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||| ||| || || || || || || || || ||||| ||||| || || ||||| Sbjct 242135846 ATGAGCCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 242135787 Query 104489 TCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| || | ||| || ||||| || || || ||||| ||||||||||| || || Sbjct 242135786 TCGATGGTGTC-CGAGGACTCCACCTCAAGGGTGATCGTCTTGCCAGTAAGTGTCTTCAC 242135728 Query 104548 AAATATCTGCAT 104559 || |||||||| Sbjct 242135727 GAAGATCTGCAT 242135716 >seq5 Length=223902240 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| | || || | ||||| || || || ||||||||||| Sbjct 84632420 TCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCGTCCTCAAGCTGCTTTCCAGCAAAG 84632479 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||| ||| || || || || || || || || ||||| ||||| || || || || Sbjct 84632480 ATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 84632539 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || || || ||||| || || |||||||| || || || || || || Sbjct 84632540 TCGATGGTGTCTGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACG 84632599 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 84632600 AAGATCTGCAT 84632610 >seq8 Length=181122637 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | ||||| | || | | | | ||| || || |||||||| || || |||| Sbjct 107214062 TTCCACCCTTGAGCCTCAAGACCAAAGGGAGTGTTGACTCCTTCTGAATGTTGTAATCAG 107214003 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || || || || || | |||||| ||||||||||| |||||||| || ||||| | Sbjct 107214002 CTAATGTCCTCCCATCCTCCAATTGTTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGCG 107213943 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 || || || || ||||||| Sbjct 107213942 AAATGCCCTCCTTGTCCTGAA 107213922 >seq2 Length=244442276 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| || ||| || || || || ||||| ||||| || || ||| ||||| ||| Sbjct 34130998 GTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGG 34131057 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||| | ||||| ||||| || | ||||||||||| || | || | ||||| Sbjct 34131058 CTCAAGAAGCGCGGCCTCATGCCGGGCCTCACTTTCTCTAATGAGCTCATCTCCCGGGAC 34131117 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || || | |||||||||||||| || Sbjct 34131118 GAGGGCCTCCACTGCGACTTCGCCTG 34131143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394461138036