Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 >seq1 Length=307041717 Score = 134 bits (148), Expect = 1e-26 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| || || | || | | || |||| ||| | ||||||| Sbjct 262588407 ACGCCGGTGGACCCGAACCCTCCGTCCCCACGGACGGTGGCGTCGAGGTCCTCCACCTCC 262588466 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || ||||| ||| | | | |||| ||||| |||||| || | |||||| | ||| Sbjct 262588467 GCGACCTCGGGCGTCGCGATCAC-CTCGATGATCATCTGCGCGATCCTGTCGCCGGGCTT 262588525 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || |||| ||| || | | |||||| || | ||||| ||| ||| |||||||| Sbjct 262588526 CACGGCGAAGTCGGCGTCGGAGTGGTTGAAGAGGATGACGCCGACGGGGCCTCGGTAGTC 262588585 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||||| |||||||| ||||||||||||||| ||||||| | |||||| || || | ||| Sbjct 262588586 CGCGTCGATCACGCCGGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGCCCCGACCTGGG 262588645 Query 5740 AGC 5742 || Sbjct 262588646 CGC 262588648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430053000576104