Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 122 7e-23 seq5 109 5e-19 seq6 95.1 1e-14 >seq4 Length=246994605 Score = 122 bits (134), Expect = 7e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| |||||||||||||| || || || || | ||||||||||| Sbjct 242113356 TGGAGGGTGCTCTCCTTCTGAATGTTGTAATCCGC-AAGGGTGCGTCCATCCTCCAGCTG 242113298 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | ||||||||| ||| ||| | | ||||||||| || || Sbjct 242113297 CTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 242113238 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | ||||||| ||| | || ||||| || || || Sbjct 242113237 GGCCTTGACATTGTCAATGGTATCTGAAGACTCCACCTCAAGAGTGATGGTCTTGCCAGT 242113178 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| |||||||| Sbjct 242113177 AAGGGTTTTCACAAAGATCTGCAT 242113154 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||||||||||| ||||||||||| || | ||| || ||| |||||| Sbjct 242135697 CACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTC-GGCAAGCGTGCGCCCGTCCT 242135639 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| | |||| | |||||||| ||| || | | ||||||||| Sbjct 242135638 CGAGCTGCTTGCCGGCAAAAATGAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCT 242135579 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | |||||||| | |||||| ||| | || || || | Sbjct 242135578 GGATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTGATAGTCT 242135519 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| ||||| || |||||||| Sbjct 242135518 TGCCAGTCAGAGTCTTCACGAAGATCTGCAT 242135488 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || || || ||||||||||| ||||||||||| || |||| ||| ||||| Sbjct 242135471 AACACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGCCAGCGTGCGCCCGTCC 242135412 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || | |||| | |||||||| ||| || | | ||||||||| Sbjct 242135411 TCGAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 242135352 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || ||||| | | || ||||| || | ||||||| ||||| || || | Sbjct 242135351 TGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGAAGACTCCACCTCGAGGGTGATAG 242135294 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| || || || || |||||||| Sbjct 242135293 TCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 242135260 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || |||||||| || | ||| ||| ||| ||||||| ||||| Sbjct 242135234 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GGCAAGTGTGCGCCCGTCCTCGAGCTG 242135176 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||| ||| || | | |||||||||| || || Sbjct 242135175 CTTGCCAGCGAAGATGAGCCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTT 242135116 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | ||||| || | |||||| ||||| || || || || || || Sbjct 242135115 GGCCTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTTCCAGT 242135056 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || || || ||||||||| Sbjct 242135055 GAGAGTCTTGACGAAGATCTGCATC 242135031 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||||||||||| || |||||||| |||||||| || | ||||| Sbjct 242136153 CACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCATCCTC 242136094 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | |||||||| ||| || | | ||||||||| Sbjct 242136093 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTG 242136034 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | ||||| || | |||||| ||| | || || || || Sbjct 242136033 GATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGGACTCCACCTCAAGGGTGATCGTCTT 242135974 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| ||||| || |||||||| Sbjct 242135973 GCCAGTAAGAGTCTTCACGAAGATCTGCAT 242135944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||||||||||| || |||||||| |||||||| || | ||||| Sbjct 242113591 CACCAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCATCCTC 242113532 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | |||||||| ||| || | || ||||||||| Sbjct 242113531 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 242113472 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | ||||| |||| ||| ||| | || ||||| || Sbjct 242113471 GATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTT 242113412 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || ||||| || |||||||| Sbjct 242113411 GCCAGTCAATGTCTTCACGAAGATCTGCAT 242113382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||||||||||| || ||||||||||| || || || || | |||| Sbjct 242135925 CACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCTGC-AAGGGTACGGCCATCCT 242135867 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | | || | |||||||| ||| || | | ||||||||| Sbjct 242135866 CCAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCT 242135807 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | ||||| || | |||||| ||| | || || || | Sbjct 242135806 GGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATCGTCT 242135747 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || ||||| || |||||||| Sbjct 242135746 TGCCAGTAAGTGTCTTCACGAAGATCTGCAT 242135716 >seq5 Length=223902240 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || ||||||||||| | ||| || || | ||||||||||| Sbjct 84632180 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCG-CAAGGGTGCGGCCATCCTCCAGCTG 84632238 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || ||||||||||| ||| || | | ||||||||| || || Sbjct 84632239 CTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 84632298 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | ||||||| ||||| || || || || ||||| Sbjct 84632299 GGCCTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 84632358 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| Sbjct 84632359 CAGGGTCTTCACGAAGATCTGCAT 84632382 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| || ||||||||||| |||| || | |||||||||||| Sbjct 84631952 TGGAGAGTGCTCTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCCAGCTGC 84632011 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| || || | | ||||||||| || || Sbjct 84632012 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTG 84632071 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | |||||||| | ||||||| ||| | || || || || || ||| Sbjct 84632072 GCCTTGACATTGTCAATGGTATCCGAAGACTCCACCTCAAGGGTGATTGTCTTGCCAGTG 84632131 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 84632132 AGTGTCTTCACAAAGATCTGCAT 84632154 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||||||||||| || |||||||| || | ||| || ||| |||||| Sbjct 84632629 CACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GGCAAGCGTGCGCCCGTCCT 84632687 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | | || | |||||||| || || | | ||||||||| Sbjct 84632688 CAAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCT 84632747 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | ||||| || | |||||| ||||| || || || | Sbjct 84632748 GGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCT 84632807 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || ||||||||||| |||||||| Sbjct 84632808 TGCCGGTCAGGGTTTTCACAAAGATCTGCAT 84632838 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||||||||||| || |||||||| || | ||| || ||| |||||| Sbjct 84632401 CACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GGCAAGCGTGCGCCCGTCCT 84632459 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | | || | |||||||| || || | | ||||||||| Sbjct 84632460 CAAGCTGCTTTCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCT 84632519 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||||| | | || ||||| || | ||||||| ||||| || || || Sbjct 84632520 GGATCTTGGCCTTGACGTTGTCG--ATGGTGTCTGAAGACTCCACCTCGAGGGTGATAGT 84632577 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || ||||| || |||||||| Sbjct 84632578 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 84632610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || |||||||||||||| |||||||| || || | || | ||||||||||| Sbjct 84631496 TGGAGGGTGCTCTCCTTTTGGATGTTGTAGTCTGCTAGGGTGCGGCCATCCTCCAGCTGT 84631555 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | | ||||||||| || ||| Sbjct 84631556 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 84631615 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||| ||| | ||||||||||| || || Sbjct 84631616 GCCTTCACATTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTTATGGTTTTTCCAGTC 84631675 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 84631676 AGGGTCTTTACAAAGATCTGCAT 84631698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || |||||||| |||| ||| || ||| ||||||| ||||| Sbjct 84632864 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAG-CAAGCGTGCGCCCGTCCTCAAGCTG 84632922 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || || | | || | |||||||| || || | | ||||||||| || || Sbjct 84632923 TTTGCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 84632982 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | ||||| || | |||||| ||||| || || || || || || Sbjct 84632983 GGCCTTAACGTTGTCAATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCAGT 84633042 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || ||||||||||| ||||||||| Sbjct 84633043 CAGGGTTTTCACAAAGATCTGCATC 84633067 >seq6 Length=174033170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| ||||||||||| || || | || ||||||| |||||| Sbjct 129161970 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 129162029 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | ||||||||| || || Sbjct 129162030 TTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 129162089 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| |||| |||||| ||| | || ||||| || || || Sbjct 129162090 GCCTTCACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTGATGGTCTTCCCCGTC 129162149 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| |||||||| ||||||||| || Sbjct 129162150 AGAGTCTTCACAAAGATCTGCATCTTG 129162176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249829222267