Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 5e-11 >seq1 Length=307041717 Score = 82.4 bits (90), Expect = 5e-11 Identities = 167/245 (68%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 75081 GCTCCCAGGTCCGGCCTGGCCCTGAAAAAATTTATAGACGTCGGTGCCGGGGTGGTGGAC 75140 || |||||||| || ||||| ||||| | | || ||||| || ||||| ||| | ||| Sbjct 262588648 GCGCCCAGGTCGGGGCTGGCGCTGAAGCACTCCATCGACGTGGGCGCCGGCGTGATCGAC 262588589 Query 75141 CCCGACTACAGGGGCAACCTCGGCGTCATACTGTTTAACTTTGGGTGCGACCCCT--TTC 75198 | |||||| | ||| | |||||||||| || || ||| | |||| || ||| Sbjct 262588588 GCGGACTACCGAGGCCCCGTCGGCGTCATCCTCTTCAACCAC---TCCGACGCCGACTTC 262588532 Query 75199 GG-GTCAAGAGGGGCGACAGGATAGCCCAGCTCGTGCTCGAGAGGTACGAGTCTCCTCCC 75257 | || ||| ||||||||||| || ||| | | ||||| | || | | || Sbjct 262588531 GCCGTGAAGCCCGGCGACAGGATCGCGCAGATGATCATCGAGGTGATCGCGACGCCCGAG 262588472 Query 75258 ATTCTGGAGGTGGACAGCCTGGACTCTACCGACAGGGGTGACGCGGGGTACGGGTCCACC 75317 | ||||||||| ||| ||| | |||| | | || |||| |||| |||||||||| Sbjct 262588471 GTCGCGGAGGTGGAGGACCTCGACGCCACCGTCCGTGGGGACGGAGGGTTCGGGTCCACC 262588412 Query 75318 GGGGT 75322 || || Sbjct 262588411 GGCGT 262588407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338763697638168