Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 140 5e-29 seq10 138 2e-28 seq8 131 3e-26 seq7 129 9e-26 seq3 123 4e-24 seq4 113 7e-21 >seq2 Length=244442276 Score = 140 bits (154), Expect = 5e-29 Identities = 179/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 15134629 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 15134687 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | |||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 15134688 TCCGGAGGCTGGCTAGGAGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 15134747 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | |||||||| || ||| ||| |||| ||| || || ||| |||| Sbjct 15134748 CCCGCGGTGTGCTCAAGATCTTTCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCG 15134807 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| |||||||| ||||||| || | || || || | Sbjct 15134808 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGATGTCGTCTACGCGCTCAAGCGACAGG 15134867 Query 16671 GCCG 16674 |||| Sbjct 15134868 GCCG 15134871 Score = 122 bits (134), Expect = 1e-23 Identities = 187/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 15068588 CGCCAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCGAT 15068529 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | |||| | | || || |||||||| |||| || | |||| || |||| Sbjct 15068528 CCGCAGGTTGGCGAGGAGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 15068469 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 15068468 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 15068409 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||| ||| ||||||| | ||||| || | || || || || Sbjct 15068408 GCACGCCCGCCGCAAGACTGTGACCGCCATGGACGTTGTCTACGCTCTCAAGCGCCAGGG 15068349 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | | || ||||| || |||| Sbjct 15068348 CCGCACCCTCTACGGTTTCGGCGGTTA 15068322 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | |||||| | | ||| Sbjct 188810240 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCTAGGAGGGGT 188810299 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | |||||||| Sbjct 188810300 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTT 188810359 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| || Sbjct 188810360 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCGCGCCGCAAGACCGTG 188810419 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 188810420 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 188810460 >seq10 Length=150982314 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||| ||||| || || Sbjct 136050741 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGAT 136050682 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | ||||| | | || || |||||||| | ||||| | |||| || |||| Sbjct 136050681 CCGTAGGCTGGCCAGGAGGGGCGGCGTCAAGCGCATTTCTGGGCTCATCTACGAGGAGAC 136050622 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 136050621 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 136050562 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| |||||||| ||||||| || | || || || || Sbjct 136050561 GCACGCTCGCCGCAAGACCGTCACCGCCATGGATGTCGTCTACGCGCTCAAGCGCCAGGG 136050502 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 136050501 CCGCACGCTCTACGGCTTCGG 136050481 >seq8 Length=181122637 Score = 131 bits (144), Expect = 3e-26 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||| ||||| || || Sbjct 16558249 CGCGAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGAT 16558308 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 16558309 CCGGAGGCTGGCGCGGCGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 16558368 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||||| ||| ||| |||| || || || ||| || || Sbjct 16558369 CCGCGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACTGA 16558428 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| |||||||| |||||| ||||||| ||||||| || | || || || || Sbjct 16558429 GCACGCTCGCCGTAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTTAAGCGCCAGGG 16558488 Query 16672 CCGTA 16676 ||||| Sbjct 16558489 CCGTA 16558493 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||||||||| || || Sbjct 120733614 CGCGAAGCGTCACCGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 120733673 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 120733674 CCGGCGGCTGGCGAGGAGGGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 120733733 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 120733734 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGA 120733793 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 120733794 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 120733853 Query 16672 CCG 16674 ||| Sbjct 120733854 CCG 120733856 Score = 114 bits (126), Expect = 2e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| ||| || || |||||||| || ||||| ||||| || || Sbjct 174489555 CGCCAAGCGTCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGAT 174489496 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 174489495 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 174489436 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || | ||| || || Sbjct 174489435 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTAACCTACACGGA 174489376 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 174489375 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 174489316 Query 16672 CCG 16674 || Sbjct 174489315 TCG 174489313 >seq7 Length=182381542 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | |||||||| | || Sbjct 123703900 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCTCGGAGGGGC 123703959 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 123703960 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 123704019 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 123704020 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCGCGCCGCAAGACCGTC 123704079 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 123704080 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 123704120 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | |||||||| | || Sbjct 123712267 CTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGAGGCTGGCTCGGAGGGGC 123712326 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | || || | |||| || |||| || | || | ||||||||| Sbjct 123712327 GGCGTGAAGCGCATTTCGGGGCTTATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 123712386 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || |||||||| Sbjct 123712387 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCACGCCGCAAGACTGTT 123712446 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 123712447 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 123712487 Score = 109 bits (120), Expect = 9e-20 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || ||||||||||| ||||| ||||| || || Sbjct 153336035 CGCCAAGCGGCACCGCAAGGTGCTCCGCGACAACATCCAAGGGATCACGAAGCCGGCGAT 153336094 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | || || | | || || || ||||| |||| || | |||| || |||| Sbjct 153336095 CCGGAGGCTTGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 153336154 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 153336155 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGA 153336214 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || |||||| ||||||| ||||||| || | || || || || Sbjct 153336215 GCACGCCCGTCGAAAAACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 153336274 Query 16672 CCG 16674 ||| Sbjct 153336275 CCG 153336277 >seq3 Length=235667834 Score = 123 bits (136), Expect = 4e-24 Identities = 186/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || || || ||||| || | Sbjct 184749944 CGCGAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATTACGAAGCCGGCGA 184749886 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| | | ||||| || ||||| |||| || | |||| || |||| Sbjct 184749885 TCCGGAGGCTGGCGAGAAGGGGTGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 184749826 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| || | || ||| || ||| || | Sbjct 184749825 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATTCGCGACGCTGTCACCTACACGG 184749766 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 184749765 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGGCAGG 184749706 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || || ||||| Sbjct 184749705 GCCGCACCCTCTACGGATTTGG 184749684 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || | || Sbjct 13212631 CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGCGGCTGGCGCGCAGGGGC 13212572 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 13212571 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 13212512 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 13212511 CTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCACGCGCGCCGCAAGACCGTC 13212452 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || || || ||||| Sbjct 13212451 ACAGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 13212411 >seq4 Length=246994605 Score = 113 bits (124), Expect = 7e-21 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 160008126 TCTCCGCGACAACATCCAGGGTATCACGAAGCCGGCAATCCGGAGGCTGGCGAGGAGGGG 160008067 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| |||| || | |||| || || | || | || | |||||||| Sbjct 160008066 CGGCGTGAAGCGTATCTCCGGGCTTATCTACGAGGAAACCCGCGGCGTGCTCAAGATCTT 160008007 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| || |||| || || || ||| |||||||||||| || ||||| || Sbjct 160008006 CCTCGAGAATGTCATCCGCGACGCGGTCACCTACACCGAGCACGCTCGCCGCAAGACCGT 160007947 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| |||||||| | || || || | || || || ||||| Sbjct 160007946 CACCGCCATGGATGTTGTGTACGCCCTCAAGCGCCAGGGCCG 160007905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074955880031