Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 1e-13 seq2 87.8 5e-12 seq6 84.2 6e-11 >seq9 Length=159769782 Score = 93.3 bits (102), Expect = 1e-13 Identities = 164/235 (70%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || |||||| || ||||| || || ||| ||||| |||| ||| || || || | Sbjct 15725308 TGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATCTATGAAACCCTGAAAGAG 15725367 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| | || ||| ||| || ||||||||||| || | || ||| | ||||| Sbjct 15725368 TGTGCTGTAATAAGCAAATCTGCTGGAGGAATTGGTGTCTCAGTTCATAATATCCGTGCT 15725427 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | ||||| ||||| || ||| |||| || ||||| | ||||| ||| | || Sbjct 15725428 ACTG-GGAGTTATATTCGAGGAACAAATGGATCATCAAATGGAATTGTTCCTATGTTACG 15725486 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| ||| | ||||||| | || || || |||||||| || || | |||||| Sbjct 15725487 TGTCTTTAATGATACTGCTCGCTATGTTGATCAGGGTGGTGGCAAAAG-AAAGGG 15725540 Score = 87.8 bits (96), Expect = 5e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || |||||| || ||||| || || ||| ||||| |||| ||| || || || | Sbjct 145279758 TGTTTTCTTATATGCATGAAAGATGACATCATTGAGGGAATCTATGAAACCCTCAAAGAG 145279699 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| | || ||| ||| || ||||||||||| || | || ||||| |||| Sbjct 145279698 TGTGCTGTAATAAGCAAATCTGCTGGAGGAATTGGTGTCTCAGTTCATAATGTCTGTGCT 145279639 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | ||||| ||||| || ||| ||| || ||||| | |||| ||| | || Sbjct 145279638 ACTG-AGAGTTATATTCGAGGAACAAATGGAACATCAAATGGAATTGTTCTTATGTTACG 145279580 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAA 363830 ||| ||| | ||||||| | || || || |||||||| || || Sbjct 145279579 TGTCTTTAATGATACTGCTCGCTATGTTGATCAGGGTGGTGGCAA 145279535 >seq2 Length=244442276 Score = 87.8 bits (96), Expect = 5e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || |||||| || ||||| || || ||| ||||| |||| ||| || || || | Sbjct 193848878 TGTTTTCTTATATGCATGAAAGATGACATCATTGAGGGAATCTATGAAACCCTCAAAGAG 193848937 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| | || ||| ||| || ||||||||||| || | || ||| | ||||| Sbjct 193848938 TGTGCTGTAATAAGCAAATCTGCTGGAGGAATTGGTGTCTCAGTTCATAATATCCGTGCT 193848997 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | ||||| ||||| || ||| ||| || ||||| | |||| ||| | || Sbjct 193848998 ACTG-AGAGTTATATTCGAGGAACAAATGGAACATCAAATGGAATTGTTCTTATGTTACG 193849056 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAA 363830 ||| ||| | ||||||| | || || || |||||||| || || Sbjct 193849057 TGTCTTTAATGATACTGCTCGCTATGTTGATCAGGGTGGTGGCAA 193849101 >seq6 Length=174033170 Score = 84.2 bits (92), Expect = 6e-11 Identities = 162/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || |||||| || ||||| || || ||| ||||| |||| ||| || || ||| | Sbjct 84115853 TGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATCTATGAAACCCTGAAGGAG 84115794 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| | || ||| || || ||||||||||| || | || ||| ||||||| Sbjct 84115793 TGTGCTGTAATAAGCAAATCAGCTGGAGGAATTGGTGTCTCAGTTCATAATATTCGTGCT 84115734 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | |||||||| || || ||| ||| || ||||| | || || ||| | || Sbjct 84115733 ACTG-GGAGTTACATACGAGGAACAAATGGAACATCAAATGGAATTGTGCCTATGTTACG 84115675 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 || ||| | ||||||| | || || || |||||||| || || | |||||| Sbjct 84115674 AGTCTTTAATGATACTGCTCGTTATGTTGATCAGGGTGGTGGGAAAAG-AAAGGG 84115621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303349141308794