Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq9 102 1e-16 seq6 102 1e-16 seq2 93.3 5e-14 seq1 87.8 2e-12 >seq9 Length=159769782 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || |||||||| | || | ||| || | |||| | || | ||||| |||| ||| ||| Sbjct 15725525 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAGGAACAATTCCA 15725466 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || |||| ||||| || ||| ||||| || ||| | ||||| |||||| || ||| Sbjct 15725465 TTTGATGATCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGGATATTATGAACTGAG 15725406 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 15725405 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGGGTTTCATAGATT 15725346 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || || ||||| ||||| | ||||||||||| Sbjct 15725345 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 15725305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | || || ||||| ||||||||||| | || | |||| | Sbjct 15725205 GTGCCAGCATTGAAAAGCGTCGGTGAAGCATGAGTAAACCAGCGCTGGGACATCAGATGG 15725146 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 |||||| || || || || || || | ||| || || || | || || | |||||| Sbjct 15725145 TACGTCCTGATGGCAGACTCGATGTCTTCCTTG-TGTATCCCCAGTGAAACCCTCATTAA 15725087 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| || |||||||||| ||| | | ||||||| ||| || | |||| Sbjct 15725086 CATGTGCTGCGGCCTTTCAACGACCTTACCATCAAGCTTCAACAGGTAAGACCTCTCCAG 15725027 Query 63646 AGTTTTAAAACCAAAATAGTTGTA 63669 |||||| || ||||| |||| ||| Sbjct 15725026 AGTTTTGAAGCCAAAGTAGTCGTA 15725003 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || |||||||| | || | ||| || | |||| | || | ||||| ||| ||| ||| Sbjct 145279541 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCCA 145279600 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || ||| ||||| || || | |||| | |||| || ||| Sbjct 145279601 TTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACAGACATTATGAACTGAG 145279660 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 145279661 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGATT 145279720 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || | ||||| ||||| | ||||||||||| Sbjct 145279721 CCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 145279761 >seq6 Length=174033170 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || |||||||| | || | ||| || | |||| | |||| ||||| || | ||| ||| Sbjct 84115636 CCACCCTGATCAACATAACGAGCAGTATCATTAAAGACTCGTAACATAGGCACAATTCCA 84115695 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || ||| || || || ||| | |||||||||||| || ||| Sbjct 84115696 TTTGATGTTCCATTTGTTCCTCGTATGTAACTCCCAGTAGCACGAATATTATGAACTGAG 84115755 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| |||| || || || | || |||||||| Sbjct 84115756 ACACCAATTCCTCCAGCTGATTTGCTTATTACAGCACACTCCTTCAGGGTTTCATAGATT 84115815 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || || ||||| ||||| | ||||||||||| Sbjct 84115816 CCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 84115856 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||| || |||||||| | || | |||||||| || ||||| Sbjct 122043166 CAGGCGAAATCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 122043107 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| || || ||||| || |||||||| |||| |||| || || || || ||||| Sbjct 122043106 CCCGGCATGAGCCCGCGCTTCTTCAGCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 122043048 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAA 32805 || || || || || ||||||| Sbjct 122043047 GATGCCCTCGACGCAGGCGAAGGCAA 122043022 >seq2 Length=244442276 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || |||||||| | || | ||| || | |||| | || | ||||| ||| ||| ||| Sbjct 193849095 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCCA 193849036 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || ||| ||||| || || | ||||| |||||| || ||| Sbjct 193849035 TTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGAG 193848976 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 193848975 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGATT 193848916 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || | ||||| ||||| | ||||||||||| Sbjct 193848915 CCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 193848875 >seq1 Length=307041717 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || |||||||| | || | ||| || | |||| | || | ||||| ||| ||| ||| Sbjct 17821910 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACATAACATAAGAACAATTCCA 17821851 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || ||| ||||| || || | ||||| |||||| || ||| Sbjct 17821850 TTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGAG 17821791 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| |||| || || ||| | || |||||||| Sbjct 17821790 ACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGATT 17821731 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 | ||| || | ||||| ||||| | ||||||||||| Sbjct 17821730 CTCTCAATGTTGTCATCTTTCATGCATATAAGAAAACAGCT 17821690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629885253200