Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 seq8 107 2e-18 seq5 95.1 1e-14 seq7 87.8 2e-12 >seq4 Length=246994605 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || |||||||||||| Sbjct 242136172 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGTCGTCT 242136231 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| || ||| ||||| || || |||||||| || Sbjct 242136232 GACACAATCGATAATGTCA---AAGC-CAAGATCCAGGACAAGGAGGGCATTCCACCGGA 242136287 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||| ||||| || | || |||| || || | | ||| || Sbjct 242136288 CCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCCGACTA 242136347 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || ||| || || | ||||| Sbjct 242136348 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTGCT 242136383 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | ||||| | || |||||||| || Sbjct 242112926 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAGTCCTCA 242112985 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| ||| ||| ||||| || || || |||||||||| Sbjct 242112986 GACACCATTGA--CAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCTGACC 242113043 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || ||||||||||| || || || |||| | || | | || |||| Sbjct 242113044 AGCAACGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGGAGGACCCTTGCTGACTACA 242113103 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||| || || || ||||| Sbjct 242113104 ACATCCAGAAGGAGAGCACCCTCCACTTGGTGCT 242113137 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || ||||||| | || |||||||| || Sbjct 242113154 ATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACTCTTGAGGTGGAGTCTTCA 242113213 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| || ||| ||||| || || || || || |||| Sbjct 242113214 GATACCATTGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 242113271 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||| ||||||||||| || | || |||| ||||| | | ||||||| Sbjct 242113272 AGCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACCCTTGCGGATTACA 242113331 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||| || || ||| || || | ||||| | || || ||||||| Sbjct 242113332 ACATTCAGAAGGAGAGCACCCTCCACCTGGTGCTGCGCCTCAGGGGAGGAA 242113382 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || || | ||||| | || || ||||| ||| Sbjct 242135488 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACTATCACCCTTGAGGTCGAGTCTTCT 242135547 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| || ||| ||||| || || || || || |||| Sbjct 242135548 GATACCATTGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACC 242135605 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | |||||| | |||||||||||||| || | || || | ||||| | | ||| |||| Sbjct 242135606 AGCAGCGGCTCATTTTTGCCGGCAAGCAGCTCGAGGACGGGCGCACGCTTGCCGACTACA 242135665 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || || ||| || || || ||||| Sbjct 242135666 ACATTCAGAAGGAGAGCACCCTCCACTTGGTGCT 242135699 >seq8 Length=181122637 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||||| || Sbjct 40272029 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCG 40272088 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 40272089 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 40272148 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||||||||| | || |||| ||||| | | ||| ||||| Sbjct 40272149 CAGCGCCTCATCTTCGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCGCCGACTACAAC 40272208 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || | ||||| | || || ||||| Sbjct 40272209 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCAGGGGAGG 40272255 >seq5 Length=223902240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || |||| || || | ||||| |||| |||||||||||| Sbjct 84633066 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCGTCT 84633007 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 84633006 GACACCATTGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 84632947 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||| |||||||| | || || | ||||| | | || ||||| Sbjct 84632946 CAGCGGCTCATCTTTGCTGGCAAACAGCTTGAGGACGGGCGCACGCTTGCTGACTACAAC 84632887 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||| || || | ||||| | || || ||||| Sbjct 84632886 ATCCAGAAGGAGAGCACCCTCCACCTTGTGCTCCGTCTCAGGGGAGG 84632840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| |||| || ||| |||| || | || || ||| || Sbjct 84631698 ATGCAGATCTTTGTAAAGACCCTGACTGGAAAAACCATAACCCTGGAGGTTGAGAGCTCG 84631639 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 84631638 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 84631579 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||||||||| | || |||| ||||| | | || ||||| Sbjct 84631578 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGCCGCACCCTAGCAGACTACAAC 84631519 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||| || || | ||||| Sbjct 84631518 ATCCAAAAGGAGAGCACCCTCCACCTTGTGCT 84631487 >seq7 Length=182381542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||||||||| || || |||||||| | || || || ||||| || | || Sbjct 119802223 GACAAGGAAGGGATTCCCCCAGATCAACAGCGACTGATATTCGCTGGCAAGCAGCTGGAG 119802282 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| || ||||| || || || || ||||| || || Sbjct 119802283 GATGGACGCACGCTGGCTGACTACAACATCCAAAAGGAGTCAACTCTTCATTTGGTCCTC 119802342 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || || |||| Sbjct 119802343 AGGCTTAGGGGTGGAA 119802358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326589923605