Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 102 9e-17 seq1 96.9 4e-15 seq3 93.3 5e-14 seq9 89.7 6e-13 seq6 89.7 6e-13 seq7 87.8 2e-12 seq8 86.0 7e-12 seq2 84.2 2e-11 >seq5 Length=223902240 Score = 102 bits (112), Expect = 9e-17 Identities = 82/97 (85%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 2893748 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 2893689 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||| ||||| |||||| || Sbjct 2893688 GCGTGGGTTCGAACCCCACTTCTGAC--ATTATTTTT 2893654 >seq1 Length=307041717 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/95 (83%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 297612423 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 297612482 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||| ||| ||||| Sbjct 297612483 GTGGGTTCAAATCCCACTTCTGACATATTTTTATT 297612517 >seq3 Length=235667834 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/102 (82%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 146851582 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 146851525 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| |||| |||| || |||||||| Sbjct 146851524 GGGTTCAAATCCCACAGCTGTCAAA-TATT-TTTGAATTTTT 146851485 >seq9 Length=159769782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGG 126319 || ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 93196554 TATAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAG 93196495 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACA-AATT 126351 |||||||||| || ||||| |||||| |||| Sbjct 93196494 GGCGTGGGTTCAAATCCCACTTCTGACAGAATT 93196462 >seq6 Length=174033170 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 105557902 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 105557843 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 105557842 GTGGGTTCAAATCCCACTTCTGACAA 105557817 >seq7 Length=182381542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 21947665 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 21947724 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 21947725 GTGGGTTCAAATCCCACTTCTGACA 21947749 >seq8 Length=181122637 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 138659554 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 138659611 Query 126325 GGGTTCGAACCCCACACCTGACAAAT 126350 |||||| || |||||| ||| ||||| Sbjct 138659612 GGGTTCAAATCCCACAGCTGTCAAAT 138659637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 161712691 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 161712634 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 161712633 GGGTTCAAATCCCACAGCTGTCAAGTTTTT 161712604 >seq2 Length=244442276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || | | || Sbjct 163611498 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACAAGGGC 163611439 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 163611438 GTGGGTTCAAATCCCACTTCTGACA 163611414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858941477080