Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq5 104 2e-17 seq4 95.1 1e-14 >seq6 Length=174033170 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| | || ||| || || || || || || Sbjct 129161976 GTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 129162035 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| |||||||| || ||||| || ||||| ||||| || Sbjct 129162036 GCGAAGATGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 129162095 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| ||| || || |||| || | || || || |||||||| Sbjct 129162096 ACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTGATGGTCTTCCCCGTCAGAGTC 129162155 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 129162156 TTCACAAAGATCTGCAT 129162172 >seq5 Length=223902240 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||| | || || || ||||| || || ||||| || Sbjct 84632648 TCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAG 84632707 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||| ||||| ||||| ||||| ||||| || ||||| ||||| || | | Sbjct 84632708 ATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 84632767 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | ||| || || || | ||| | || ||||||||||| ||||| ||| Sbjct 84632768 TCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTTTTCACA 84632827 Query 114372 AAAATCTGCATGGCT 114386 || ||||||||| || Sbjct 84632828 AAGATCTGCATGCCT 84632842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| || | ||| || ||| || || || || || || || Sbjct 84631736 TCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAG 84631795 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || |||||||| ||||| || |||||||| || ||||| ||||| || | | Sbjct 84631796 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG 84631855 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | | || || |||| ||| | || ||||| |||| || || ||| Sbjct 84631856 TCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACA 84631915 Query 114372 AAAATCTGCATG 114383 |||||||||||| Sbjct 84631916 AAAATCTGCATG 84631927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || ||||||||||| | || || ||| || || || || |||||| || Sbjct 84632192 TCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 84632251 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | |||||| |||||||| || ||||| || ||||| ||||| || | | Sbjct 84632252 ATCAAACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 84632311 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | || || || || | ||| | || ||||||||||| || || || Sbjct 84632312 TCGATGGTGTCTGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACG 84632371 Query 114372 AAAATCTGCATGGCT 114386 || ||||||||| || Sbjct 84632372 AAGATCTGCATGCCT 84632386 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||| | || || || ||||| || || ||||| || Sbjct 84632420 TCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCGTCCTCAAGCTGCTTTCCAGCAAAG 84632479 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||| ||||| ||||| || |||||||| || ||||| ||||| || | | Sbjct 84632480 ATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 84632539 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | || || || || | ||| | || ||||||||||| || || || Sbjct 84632540 TCGATGGTGTCTGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACG 84632599 Query 114372 AAAATCTGCATGGCT 114386 || ||||||||| || Sbjct 84632600 AAGATCTGCATGCCT 84632614 >seq4 Length=246994605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || ||||||||||| | ||||| ||| || || || || ||||| || Sbjct 242135906 TCCTTCTGGATGTTGTAATCTGCAAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAG 242135847 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||| ||||| |||||||| |||||||| || ||||| ||||| || | | Sbjct 242135846 ATGAGCCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 242135787 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||| | ||| || || || | ||| | ||| ||||| || || || || || Sbjct 242135786 TCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATCGTCTTGCCAGTAAGTGTCTTCACG 242135727 Query 114372 AAAATCTGCATG 114383 || ||||||||| Sbjct 242135726 AAGATCTGCATG 242135715 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||| | || || || || || || || |||||| || Sbjct 242135222 TCCTTCTGGATGTTGTAGTCGGCAAGTGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAG 242135163 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||| ||||| |||||||| ||||||||||| ||||| ||||| || | | Sbjct 242135162 ATGAGCCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 242135103 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | ||| || || || | ||| | || || || || ||||| || || Sbjct 242135102 TCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACG 242135043 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 242135042 AAGATCTGCAT 242135032 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || ||||||||||| ||| | || || || || || || || || || | Sbjct 242135678 TCCTTCTGAATGTTGTAGTCGGCAAGCGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAA 242135619 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||| ||||| ||||||||||| ||||| || ||||| ||||| || | | Sbjct 242135618 ATGAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 242135559 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| ||| || | || ||||| || | ||| | || ||||| |||||||| || || Sbjct 242135558 TCAATGGTATCAGAAGACTCGACCTCAAGGGTGATAGTCTTGCCAGTCAGAGTCTTCACG 242135499 Query 114372 AAAATCTGCATG 114383 || ||||||||| Sbjct 242135498 AAGATCTGCATG 242135487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133032856404