Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 372 6e-98 seq2 340 3e-88 seq9 322 9e-83 >seq6 Length=174033170 Score = 372 bits (412), Expect = 6e-98 Identities = 594/843 (70%), Gaps = 21/843 (2%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||| ||||||||| ||||||| | ||| | Sbjct 122042625 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTTGACCTCTCTGCCGACGC- 122042683 Query 42372 GCCGGC--TGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGG 42426 ||||| ||||| | | ||||| |||| ||| || || | || | Sbjct 122042684 -CCGGCACTGGGACGAGGCGCTGTCCCCCGACGAGCGCCACTTCATCTCTCACGTGCTCG 122042742 Query 42427 CCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAG 42486 |||||||||||||||| |||||||| || |||||||| || || | |||||| | Sbjct 122042743 CCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTCCG 122042802 Query 42487 AGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGC 42546 | |||||| | |||||||| |||||||||||||||||| ||||| |||||| | | Sbjct 122042803 ACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCC 122042862 Query 42547 ACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACG 42606 |||| ||| ||||| | |||||| | || ||||||| || ||||||| || Sbjct 122042863 ACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAGGACC 122042922 Query 42607 GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 | || ||| ||||| || ||| ||||| || | |||||||||||||| | Sbjct 122042923 GCCTCTTCCGCGCCATCGATACGGTGCCCGCGGTCCGGCGCAAGGCGGACTGGGCCATGC 122042982 Query 42667 ACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 ||||||||| | || ||| |||| |||| | || || ||||| || |||| Sbjct 122042983 GCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTC 122043038 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG 42785 ||||||||||||||||||||| ||||| | ||||||| ||||| ||| || | | Sbjct 122043039 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTTTGGCTGAAGAAGCGCGGGCTC 122043098 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | || Sbjct 122043099 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGAT 122043158 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTCC 42903 || ||||||||||| | | || | ||| |||| ||||| ||| || || | Sbjct 122043159 TTCGCCTGCCTCCTCTACGATGTCCTACGCAG---CAAG--CTCGACGAGGCCCGCGTGC 122043213 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | | ||| || | || ||||| || |||||| |||||| || | | || || | Sbjct 122043214 GCACGATCGTCGCTGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCCCTCCCTG 122043273 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | ||||| |||||||||||| ||||||||| || |||||||| ||| ||| ||||||| Sbjct 122043274 TCTCCCTCGTCGGCATGAACGGGGACCTCATGAGCCAGTACATCGAGTTCGTGGCCGACC 122043333 Query 43024 ATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTT 43082 || || || | |||| || | | |||||| | | ||||||||||| Sbjct 122043334 GCCTGCTCATGGCGCTCGGGTGCAAGAAG-ATGTACAACGTGACCAACCCCTTCGACTGG 122043392 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||| ||||||| || |||| ||||||||||| |||||||||||||||| |||||| Sbjct 122043393 ATGGAGCTCATCTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTAC 122043452 Query 43143 CAG 43145 ||| Sbjct 122043453 CAG 122043455 >seq2 Length=244442276 Score = 340 bits (376), Expect = 3e-88 Identities = 593/844 (70%), Gaps = 23/844 (3%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||| ||||||||| | ||||| || |||| || Sbjct 34130602 TACAAGAAGGCGGTGGCGTCCTTCTGGACTGCCGAGGAGGTGGACCTCTCCGCGGACGCG 34130661 Query 42372 GCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | |||||| | | || || |||| ||| || || | || ||| Sbjct 34130662 CGCCACTGGGACGCGGCCCTCTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 34130721 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||||||||| |||||||| || |||||||| ||| || | |||||| || Sbjct 34130722 TTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCTTCATGTCCGAT 34130781 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 || ||| | ||||||||| ||| ||||||||||| || ||||| |||||| | ||| Sbjct 34130782 GTCCAGGTCGCCGAGGCGCGCGCCTTTTACGGCTTCCAAATCGCCATCGAGAACATCCAC 34130841 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGG 42608 || ||| ||||| | |||||| | || ||||||| ||| | |||| || | Sbjct 34130842 TCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGATGGCACCGAGAAGGACCGC 34130901 Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGCGCTCAA 42667 || ||| ||||| || || | ||| | | | | | ||||| |||||||| | Sbjct 34130902 CTCTTCCGCGCCATCGAAACCGTCCCCGCCGT-ACGCCGCAAGGCCGACTGGGCCATGCG 34130960 Query 42668 CTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 ||||||||| | || ||| || | |||| | || || ||||| || ||||| Sbjct 34130961 CTGGATCGACGGCGGGGAGCGC----TTTGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCG 34131016 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCG 42785 |||||||||||||||||||| ||||| | ||||||||||||||||| || || || Sbjct 34131017 AGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC- 34131075 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||| || ||||| ||||| || || |||||| | |||||||||| || || | ||| Sbjct 34131076 ATGCCGGGCCTCACTTTCTCTAATGAGCTCATCTCCCGGGACGAGGGCCTCCACTGCGAC 34131135 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTCC 42903 || ||||||||||| || | || || ||| || |||| ||||| || || |||| Sbjct 34131136 TTCGCCTGCCTCCT-TTAT-GA-CCTCCTTCGGGGCAAG--CTCGATGAGTCCCGCGTCC 34131190 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | | ||| | | || ||||| || |||||| |||||| | | |||| |||| Sbjct 34131191 GCGAGATCGTTGCCGACGCCGTCGACATCGAGCGTGAGTTCGTTTGCGACGCGCTCCCCG 34131250 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | | |||||||| |||||| || |||||| || |||||||| ||| ||||||||||| Sbjct 34131251 TCGCGCTGGTCGGAATGAACGGCGGGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACC 34131310 Query 43024 ATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTCGACTT 43081 || || || | | |||| | ||| | |||||| |||| ||||||||||| Sbjct 34131311 GCCTGCTCATGGC-GCTGGGGCACAGGAAGATGTACAACGTCGCC-AACCCCTTCGACTG 34131368 Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 |||||| ||| || || |||||||||| ||||| || ||||||||||||| || || Sbjct 34131369 GATGGAGCTCATTTCCCTGCAGGGCAAGACTAACTTCTTTGAGAAGCGCGTCGGGGAGTA 34131428 Query 43142 CCAG 43145 |||| Sbjct 34131429 CCAG 34131432 >seq9 Length=159769782 Score = 322 bits (356), Expect = 9e-83 Identities = 584/843 (69%), Gaps = 21/843 (2%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | |||| |||||| || |||||| ||||||| | ||| | Sbjct 30986925 TACAAGAAGGCGGTGGCCTCCTTCTGGACGGCGGAGGAGGTTGACCTCTCTGCCGACGC- 30986983 Query 42372 GCCGGC--TGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGG 42426 ||||| ||||| | | ||||| |||| | ||| || || | || | Sbjct 30986984 -CCGGCACTGGGACGAGGCGCTGTCCCCCGACGAGCGGCACTTCATCTCCCACGTGCTCG 30987042 Query 42427 CCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAG 42486 |||||||||| ||||| |||||||| || |||||||| || || | ||||||| | Sbjct 30987043 CCTTCTTCGCTGCCTCCGACGGCATCGTGCTCGAGAACCTCGCTTCCCGCTTCATGACCG 30987102 Query 42487 AGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGC 42546 | |||||| | |||||||| |||||||||||||||||| ||||| |||||| | | Sbjct 30987103 ACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCC 30987162 Query 42547 ACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACG 42606 |||| ||| |||| | |||||| | || ||||||| || | ||||||| || Sbjct 30987163 ACTCGGAGATGTATTCGCTGCTGCTCGAGACCTACATCCGCGACCACGTCGAGAAGGACC 30987222 Query 42607 GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 | |||||| ||||| || || ||||| || | ||||| |||||||| | Sbjct 30987223 GCCTGTTCCGCGCCATCGACACCGTGCCCGCGGTCCGGCGCAAGGCTGACTGGGCCATGC 30987282 Query 42667 ACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 ||||||||| | || ||| |||| ||| | | || ||||| || |||| Sbjct 30987283 GCTGGATCGACGGCGGGGAGCGC----TTCGCTGAGCGCATCGTTGCCTTCGCCTGCGTC 30987338 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG 42785 |||||||| ||||||||||| ||||| | ||||||||||||||||| || | | Sbjct 30987339 GAGGGCATATTCTTCTCGGGGTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTC 30987398 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||| || ||||||||||| ||||| |||||| | | || ||||| || || | || Sbjct 30987399 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGATGAGGGCCTCCACTGTGAT 30987458 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTCC 42903 || ||||||||||| | |||| | ||| | ||||| ||||| ||| || || | Sbjct 30987459 TTCGCCTGCCTCCTCT--ACGAG-CTTCTCCGCAACAAG--CTCGACGAGGCCCGCGTAC 30987513 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | | ||| || | || || || || |||||| |||||| || | | || || | Sbjct 30987514 GCGAGATCGTCGCAGACGCTGTCGACATCGAGCGCGAGTTCGTCTGCGACGCCCTCCCTG 30987573 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | | || |||||||||||| || |||||| || ||||||| | | ||| ||||||| Sbjct 30987574 TCGCGCTCGTCGGCATGAACGGGGATCTCATGAGCCAGTACATTGAATTCGTGGCCGACC 30987633 Query 43024 ATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTT 43082 || || || | |||| || | | |||||| | | |||||||||| Sbjct 30987634 GCCTGCTCATGGCGCTCGGGTGCAAGAAG-ATGTACAACGTGACCAATCCCTTCGACTGG 30987692 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||| ||||||| || ||| ||||||||||| |||||||||||||| | |||||| Sbjct 30987693 ATGGAGCTCATCTCGCTGATGGGGAAGACCAACTTCTTCGAGAAGCGCGTGGGTGACTAC 30987752 Query 43143 CAG 43145 ||| Sbjct 30987753 CAG 30987755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336048267920