Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 149 1e-30 seq6 149 1e-30 seq2 145 2e-29 >seq9 Length=159769782 Score = 149 bits (164), Expect = 1e-30 Identities = 308/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || |||||||| |||| |||| | ||||| || || || | || || ||| ||| Sbjct 30987306 TTCGCTGAGCGCATCGTTGCCTTCGCCTGCGTCGAGGGCATATTCTTCTCGGGGTCCTTC 30987365 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 30987366 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 30987425 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| ||||| |||||||| ||| | |||| || | || ||| Sbjct 30987426 CTCATCTCCCGCGATGAGGGCCTCCACTGTGATTTCGCCTGCCTCCTCTACGAGCTTCTC 30987485 Query 243469 CAGAACAAGCTACCATTCGAAACGGTCAAAC---AAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||||| | | ||| | | || | ||| || |||| || || || | | Sbjct 30987486 CGCAACAAGCT-CGA--CGAGGCCCGCGTACGCGAGATCGTCGCAGACGCTGTCGACATC 30987542 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAACT 243584 || || ||| | |||||||| | || || || ||| | ||||||||| || || Sbjct 30987543 GAGCGCGAGTTCGTCTGCGACGCCCTCCC-TGTCGCGCTCGTCGGCATGAACGGGGATCT 30987601 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| |||||||| ||||||||| | |||| ||||| || | |||| Sbjct 30987602 CATGAGCCAGTACATTGAATTCGTGGCCGACCGCCTGCTCATGGCGCTCGGGTGCAAGAA 30987661 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| | || ||||| | || ||||||||||| ||||| ||||| || Sbjct 30987662 GATGTACAACGTGACCAATCCCTTCGACTGGATGGAGCTCATCTCGCTGATGGGGAAGAC 30987721 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| || |||| || || Sbjct 30987722 CAACTTCTTCGAGAAGCGCGTGGGTGACTACCA 30987754 >seq6 Length=174033170 Score = 149 bits (164), Expect = 1e-30 Identities = 309/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||| |||| | ||||| || || || | || || || ||| Sbjct 122043006 TTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 122043065 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 |||||||||||||||||| ||| || | ||||| |||||| | || |||||| Sbjct 122043066 TGCGCCATCTTTTGGCTGAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 122043125 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG--C 243466 ||||| |||||||||||||| ||| | |||| || | || | | | | Sbjct 122043126 CTCATCTCCCGCGACGAGGGCCTGCACTGCGATTTCGCCTGCCTCCTCTA--CGATGTCC 122043183 Query 243467 TCCAGAACAAGCTACCATTCGAAACG-GT-CAAACAAATCATCACAGAAGCAGTTGAAAA 243524 | | | |||||| | | | || || | || | || || | || || || || | Sbjct 122043184 TACGCAGCAAGCT-CGACGAGGCCCGCGTGCGCACGA-TCGTCGCTGACGCCGTCGACAT 122043241 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| || ||| | |||||||| | || | || | ||||||||| || || Sbjct 122043242 CGAGCGCGAGTTCGTCTGCGACGCCCTCCCTGTCTCCCTCGTCGGCATGAACGGGGACCT 122043301 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 122043302 CATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCATGGCGCTCGGGTGCAAGAA 122043361 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| | |||||||| | || ||||||||||| ||||| || || || || Sbjct 122043362 GATGTACAACGTGACCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGAAAGAC 122043421 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| |||| || || Sbjct 122043422 CAACTTCTTCGAGAAGCGCGTCGGTGACTACCA 122043454 >seq2 Length=244442276 Score = 145 bits (160), Expect = 2e-29 Identities = 560/869 (64%), Gaps = 12/869 (1%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| |||| ||| ||| | || ||||| | || |||||||| ||||| |||| ||| Sbjct 34130569 TTCCCGATCCGGTACCCGCAGATTTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 34130628 Query 242935 ACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATG 242992 || ||||||| || ||||| ||| |||| | ||||| || | ||| Sbjct 34130629 ACTGCCGAGGAGGTGGACCTCTC--CGCGGACGCGCGCCACTGGGACGCGGCCCTCTCCC 34130686 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 |||||| || || |||||| ||| | || | || ||||| | |||||| || || | Sbjct 34130687 CCGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 34130746 Query 243053 TGATGGAAAATCTGCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGCAA 243111 || | || || || || ||| | ||| || || ||| | ||||| || Sbjct 34130747 TGCTCGAGAACCTCGCCTCCCGCTTCA-TGTCCGATGTCCAGGTCGCCGAGGCGCGCGCC 34130805 Query 243112 TTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATC 243171 ||||| | | ||||| || ||| ||||| || || || | || || || Sbjct 34130806 TTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTC 34130865 Query 243172 GACGCGCTTATTTCAGATG--AACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACA 243229 || | || |||| | | ||| || || || ||| ||||||||||| | Sbjct 34130866 GAGACCTACATCCGCGATGGCACCGAGAAGGAC-CGC-CTCTTCCGCGCCATCGAAACCG 34130923 Query 243230 TTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCAT 243289 | || || || | |||||| | ||||| | ||| | || ||| | | Sbjct 34130924 TCCCCGCCGTACGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGCT 34130983 Query 243290 TTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCT 243349 |||| ||||| ||||| |||| | ||||| || || || | || || || |||| Sbjct 34130984 TTGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCT 34131043 Query 243350 GCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGT 243409 |||||||||| ||||| ||| || | ||||| |||||| | | ||||| ||| Sbjct 34131044 GCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACTTTCTCTAATGAGC 34131103 Query 243410 TCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCC 243469 ||||| || ||||||||||| ||| | |||| || | ||| || | Sbjct 34131104 TCATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTTTATGACCTCCTTC 34131163 Query 243470 AGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAA 243528 | |||||| | || | || ||| | ||| | | || || || || | ||| Sbjct 34131164 GGGGCAAGCT-CGATGAGTCCCGCGTCCGCGAGATCGTTGCCGACGCCGTCGACATCGAG 34131222 Query 243529 AAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATG 243588 || ||| |||||||||| | || | ||| | || |||||| | |||||| Sbjct 34131223 CGTGAGTTCGTTTGCGACGCGCTCCCCGTCGCGCTGGTCGGAATGAACGGCGGGCTCATG 34131282 Query 243589 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTG 243648 | ||||||||||| ||||| ||||||||| | |||| ||||| || | ||| || Sbjct 34131283 AGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGGCACAGGAAGATG 34131342 Query 243649 TACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAAC 243708 |||||| | |||||||| | || |||||||||||||| || || || || |||||| Sbjct 34131343 TACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATTTCCCTGCAGGGCAAGACTAAC 34131402 Query 243709 TTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||| || ||||| ||| | || || || Sbjct 34131403 TTCTTTGAGAAGCGCGTCGGGGAGTACCA 34131431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876227116450