Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 145 9e-30 seq9 143 3e-29 seq2 141 1e-28 >seq6 Length=174033170 Score = 145 bits (160), Expect = 9e-30 Identities = 310/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 122043452 GTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAGATGAGCTCCAT 122043393 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 125876 | || || ||||| | ||| | || | | |||||| | | |||| || | Sbjct 122043392 CCAGTCGAAGGGGTTGGTCACGTTGTACATCTTCTTGCACCCGAG-CGCCATGAGCAGGC 122043334 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 125935 | || | ||| |||| ||||||| ||| || |||||| |||| |||| | Sbjct 122043333 GGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCCCCGTTCATGCCGACGAGGGAGA 122043274 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||| ||||| ||| |||| | ||| || || ||||| || ||||| | | Sbjct 122043273 CA-GGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCAGCGACGATCGTG 122043215 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAAC 126052 | | | | || | | | | |||| | | || | || ||| || ||| || Sbjct 122043214 CGCACGCGGGCCTCGTCGAGCTTGCTGCGTAGGACATCGTAGAGGAGG--CA-GGCGAAA 122043158 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 122043157 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 122043098 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||||| ||| || || || || || || |||||||||||||| ||||| Sbjct 122043097 AGCCCGCGCTTCTTCAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 122043038 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| |||| ||| ||||| || ||| Sbjct 122043037 ACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAG 122043005 Score = 127 bits (140), Expect = 2e-24 Identities = 257/380 (68%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || | |||||| | ||||| || ||||| ||| ||| || | ||| Sbjct 86009253 ACGGTGACCTGCCTATCAAATCTCCCTGGTCGTAGGAGCGCGGAGTCCAGCACATCGGGC 86009194 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| || || || | |||| || || | | | | | |||||||||||||| ||| Sbjct 86009193 CTGTTGGTGGCGGCAAGCACAATGACACCGCTGTTGCCAGCGAAGCCATCCATCTCCGTC 86009134 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTG 10951 ||||| || || ||||| || || | || ||||| | | |||| || |||| | Sbjct 86009133 AAGAGCTGGTTAATGGTCTGCTCTCTCTCGTCATTACC---CCCACCAAGTCCGGCACCG 86009077 Query 10952 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGG 11011 || ||| | || ||||| ||||| ||||| ||||| || || || || || | | Sbjct 86009076 CGCTGCCTTCCAACGGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTG 86009017 Query 11012 GCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAA 11071 || || |||| || || || || |||||||||||| || || | || || || Sbjct 86009016 GCCTTCTCGAAGAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAAC 86008957 Query 11072 TTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGG 11131 | | ||| | || || |||||| || || || || |||| ||| || || ||| Sbjct 86008956 TCAGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCAGCGACGGCACGCGCAAGG 86008897 Query 11132 AGGGTCTTCCCCGTCCCAGG 11151 ||||||||||| |||||||| Sbjct 86008896 AGGGTCTTCCCGGTCCCAGG 86008877 Score = 102 bits (112), Expect = 1e-16 Identities = 346/534 (65%), Gaps = 4/534 (1%) Strand=Plus/Plus Query 10620 GGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCT 10679 |||||||| |||||| | ||||| || | |||||| || |||||| | || || Sbjct 116995070 GGATGGCAGCCTCATTCATAAGGTTGGCAAGGTCGGCGCCGCTGAAGCCGGGGGTGCGCA 116995129 Query 10680 TTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCGTGGACACCCA 10739 | || | | || ||| ||| ||| ||| | |||||| | ||| || | | Sbjct 116995130 TGGCCACGACGCTGAGCGACACGTCGGGGTCCAGCCTCTTGTTGGAGCTGTGTACCCTGA 116995189 Query 10740 AAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGAC 10799 |||| ||| || ||||| || || || ||| ||| || || || ||||| | Sbjct 116995190 GGATCTCCTCCCGCCCGCGGACGTCAGGGAGCCCGACGCTGACCTGGCGGTCGAAGCGGC 116995249 Query 10800 CTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGA 10859 | |||||||| || ||| |||| ||||| ||| |||||||| ||||||||||| |||| Sbjct 116995250 CCGGGCGGAGCAGCGCGGCGTCGAGGATGTCAGGCCGGTTCGTGGCCGCGATGACGACGA 116995309 Query 10860 TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGC 10919 || | || || || |||||||| |||| || || || | || || || | Sbjct 116995310 CTCCGCTGTCCCCGCTGAACCCGTCCATCTCCGTCAGCAGCTGGTTCAGCGTCTGCTCCC 116995369 Query 10920 GTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCA 10978 | || || || | | || | |||| | ||| || || |||||||| || || Sbjct 116995370 GCTCGTCGTTGCCCCCGCCGA-TGCCCGTGCCGCGCTGGCGGCCCACGGCGTCGATCTCG 116995428 Query 10979 TCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTC 11038 |||||||| |||| ||||| || | ||| | |||| || || || | | Sbjct 116995429 TCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAAGAGGTCCCGCACCCGC 116995488 Query 11039 TTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGG 11097 || || || || || ||||| || | || | || ||| ||| | || ||| || Sbjct 116995489 GACGCGCCCACGCCGACGAACATCTCGATGAACTCGGACCCGG-ACAGAGAGAAGAAAGG 116995547 Query 11098 GACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||| | || ||||||||||| ||| || || ||||||||||| || || Sbjct 116995548 CACGCCTGCCTCCCCCGCGATGGCCTTGGCCAGCAGCGTCTTCCCCGTGCCCGG 116995601 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 115233 ||| ||||| ||||| ||||||||||| || ||||||| || || | ||| | || Sbjct 84115940 TTGGGGCCTCGGTGTGCCAGCGTTGAAAAGTGTTGGTGATGCATGTGTAAACCAGCGCTG 84115999 Query 115234 GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 115293 ||||||| || ||| ||| | | | | |||||||||| ||| || || | || Sbjct 84116000 GGACATCAGATGGTACGTCCTAATGGCAGACTCAATGTCTTCCTTGTGTATTCCCACTGA 84116059 Query 115294 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 115353 |||| ||| | ||||| || || |||| | | | ||| | ||| || |||||| Sbjct 84116060 AACCCTCATCAGCATGTGCTGAGGCCTTTCAACGACCTTCCCACCAAGCTTCAAGAGGTA 84116119 Query 115354 ACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401 | | |||||| || |||| ||||| || || |||| | ||||| Sbjct 84116120 AGACCTCTCCAGAGTTTTGAAGCCAAAGTAGTCATAGTCGAAATCCCT 84116167 >seq9 Length=159769782 Score = 143 bits (158), Expect = 3e-29 Identities = 305/450 (68%), Gaps = 4/450 (1%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| |||||||| || ||| |||||| Sbjct 30987752 GTAGTCACCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCATCAGCGAGATGAGCTCCAT 30987693 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 125876 | || || || || | ||| | || | | |||||| | | |||| || | Sbjct 30987692 CCAGTCGAAGGGATTGGTCACGTTGTACATCTTCTTGCACCCGAG-CGCCATGAGCAGGC 30987634 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 125935 | || | ||| | |||||||||| ||| || |||||| |||| ||| | | Sbjct 30987633 GGTCGGCCACGAATTCAATGTACTGGCTCATGAGATCCCCGTTCATGCCGACGAGCGCGA 30987574 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||| ||||| ||| |||| | ||| || || || || || ||||| || Sbjct 30987573 CA-GGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACAGCGTCTGCGACGATCTCG 30987515 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCT 126055 | | | | || | | | | ||||| | | || | |||| ||| || || Sbjct 30987514 CGTACGCGGGCCTCGTCGAGCTTGTTGCGGAGAAGCTCGTAGAGGAGGCAGGCGAAATCA 30987455 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 |||||| ||||| || ||||||||||| || || |||||| || || |||||||| Sbjct 30987454 CAGTGGAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGC 30987395 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 || |||||||| | |||||| || || || || || ||||||||||| || ||||| || Sbjct 30987394 CCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGACCCCGAGAAGAATATGCCCTCGACG 30987335 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || ||||| |||| || |||||||| ||| Sbjct 30987334 CAGGCGAAGGCAACGATGCGCTCAGCGAAG 30987305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || | ||| || | ||| ||| ||||| || || || Sbjct 113593984 TCAAAGCGCCCAGGTCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 113594043 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || |||| || || || | | ||||| |||||||||||||| | |||||||| | Sbjct 113594044 ATAACAATAATTCCGGTGTTGCCCTCAAAACCATCCATCTCAGTTAGTAGTTGATTTAGA 113594103 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 10969 || || || | ||||||||| | | ||| | || | |||| | || || || Sbjct 113594104 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 113594163 Query 10970 TCAATTTCATCGATGAAAACGATACACGG-TTGATTTTCACGGGCAACTTCAAAGATATC 11028 ||||||||||||| || || || || || | | | | || | ||| ||| | || Sbjct 113594164 TCAATTTCATCGACAAACACTATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGGTC 113594222 Query 11029 TCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 || ||||| ||||| ||||| |||||||| |||||||| Sbjct 113594223 ACGTACTCTGGAAGCACCAACACCAACAAACATCTCCACAAA 113594264 >seq2 Length=244442276 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| ||||| ||||| || || |||||||| || Sbjct 34131129 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCATTAGAGAAAGTGAGGCCCGGCATGAGGCC 34131070 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || |||||||||||||| ||||| || || Sbjct 34131069 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 34131010 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||| |||| ||| ||||| |||||| Sbjct 34131009 GGCGAAGGCAACGAGGCGCTCGGCAAAG 34130982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351606332360