Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 6e-12 seq5 84.2 2e-11 seq4 82.4 7e-11 >seq8 Length=181122637 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | | ||| || |||||||| || ||||| ||||| || || ||| | Sbjct 40272255 CCTCCCCTGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 40272196 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | ||||| || ||| | || | || |||||||||||||| Sbjct 40272195 AGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 40272136 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || ||||| || Sbjct 40272135 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 40272077 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || || || || || || || || |||||| Sbjct 40272076 CTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 40272028 >seq5 Length=223902240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| || || || ||| | ||||| || ||||||||||| || ||||| || || Sbjct 84632227 ATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGTGGGATGCCCTCCTT 84632286 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || || || |||| || | |||||| |||||||| || ||||| || | Sbjct 84632287 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCGAGGGTGAT 84632346 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| || || || || || || ||||| Sbjct 84632347 AGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 84632382 >seq4 Length=246994605 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | || ||| || || || || ||||| || || || ||||| Sbjct 242113383 ATTCCTCCCCTGAGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAATCC 242113324 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || || | || | || |||||||||||| Sbjct 242113323 GCAAGGGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGC 242113264 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | ||| || |||||||| Sbjct 242113263 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAAGACTCC 242113204 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || ||||| || || ||||| ||||| || ||||| Sbjct 242113203 ACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 242113154 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| || || || ||| | |||| || ||||||||||| |||||||| || || Sbjct 242136099 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGAATGCCCTCCTT 242136040 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 || || || || |||| || | || | |||||| || ||||| || || || || | Sbjct 242136039 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGGACTCCACCTCAAGGGTGA 242135981 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || ||||| || || || || ||||| Sbjct 242135980 TCGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 242135944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001691439320