Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 145 9e-30 seq2 141 1e-28 seq9 134 2e-26 >seq6 Length=174033170 Score = 145 bits (160), Expect = 9e-30 Identities = 310/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 122043452 GTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAGATGAGCTCCAT 122043393 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349 | || || ||||| | ||| | || | | |||||| | | |||| || | Sbjct 122043392 CCAGTCGAAGGGGTTGGTCACGTTGTACATCTTCTTGCACCCGAG-CGCCATGAGCAGGC 122043334 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 127408 | || | ||| |||| ||||||| ||| || |||||| |||| |||| | Sbjct 122043333 GGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCCCCGTTCATGCCGACGAGGGAGA 122043274 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||| ||||| ||| |||| | ||| ||||| || || || ||||| | | Sbjct 122043273 CA-GGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCAGCGACGATCGTG 122043215 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAAC 127525 | | | || | | | | |||||| | || | || ||| || || || Sbjct 122043214 CGCACGCGGGCCTCGTCGAGCTTGCTGCGTAGGACATCGTAGAGGAGG--CAG-GCGAAA 122043158 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 122043157 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 122043098 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||||| ||| || || || || || ||||| ||||||||||| ||||| Sbjct 122043097 AGCCCGCGCTTCTTCAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 122043038 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| |||| || |||||||| ||| Sbjct 122043037 ACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAG 122043005 Score = 138 bits (152), Expect = 1e-27 Identities = 282/415 (68%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 12656 AATCTTCTCGCGTCCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGAC 12714 |||||| |||||||| ||| |||| | | ||||||| || | |||||| | | Sbjct 86009287 AATCTTGACGCGTCCGGCAACATCTGGCCTGTCA-ACGGTGACCTGCCTATCAAATCTCC 86009229 Query 12715 CTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGA 12774 |||| || ||||| ||| ||| || | ||| | ||| || || || | |||| || Sbjct 86009228 CTGGTCGTAGGAGCGCGGAGTCCAGCACATCGGGCCTGTTGGTGGCGGCAAGCACAATGA 86009169 Query 12775 TGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCAC 12834 || | | | | |||||||||||||||| |||||||| || || ||||| || || | Sbjct 86009168 CACCGCTGTTGCCAGCGAAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCTC 86009109 Query 12835 GTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTT 12891 || ||||| | | |||| || |||| ||| ||| | || ||||| ||||| | Sbjct 86009108 TCTCGTCATTACC---CCCACCAAGTCCGGCACCGCGCTGCCTTCCAACGGCATCAATCT 86009052 Query 12892 CGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTC 12951 | |||||||| || || || || || | ||| || |||| || ||||| | Sbjct 86009051 CATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCGCGCACCC 86008992 Query 12952 TCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGG 13011 | |||||||||||| || || | ||| || || | | ||| | || || ||||| Sbjct 86008991 TGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCAGAGGCAGCGCAGGAGAAGAAGG 86008932 Query 13012 GGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || || || || |||| ||| || || |||||||||||||| ||||| || Sbjct 86008931 GCACCCCGGCCTCCCCAGCGACGGCACGCGCAAGGAGGGTCTTCCCGGTCCCAGG 86008877 Score = 125 bits (138), Expect = 9e-24 Identities = 387/591 (65%), Gaps = 6/591 (1%) Strand=Plus/Plus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | || |||||||| |||||| | ||||| || | |||||| || Sbjct 116995053 GCCGCGGCGGCCGGCAAGGATGGCAGCCTCATTCATAAGGTTGGCAAGGTCGGCGCCGCT 116995112 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 |||||| | || || | || | | || ||| ||| ||| ||| | |||||| Sbjct 116995113 GAAGCCGGGGGTGCGCATGGCCACGACGCTGAGCGACACGTCGGGGTCCAGCCTCTTGT- 116995171 Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696 | | || ||| || | | |||| ||| || ||||| || || || ||| ||| Sbjct 116995172 TGGAGCTGTGTACCCTGAGGATCTCCTCCCGCCCGCGGACGTCAGGGAGCCCGACGCTGA 116995231 Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756 || || || ||||| || |||||||| || ||| |||| ||||| ||| ||||||| Sbjct 116995232 CCTGGCGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCAGGCCGGTTCG 116995291 Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816 | ||||||||||| |||| || | || ||| || |||||||| |||| || | Sbjct 116995292 TGGCCGCGATGACGACGACTCCGCTGTCCCCGCTGAACCCGTCCATCTCCGTCAGCAGCT 116995351 Query 12817 GATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTA 12875 | || | || || || || || || || | | || | |||| | ||| || Sbjct 116995352 GGTTCAGCGTCTGCTCCCGCTCGTCGTTGCCCCCGCCGA-TGCCCGTGCCGCGCTGGCGG 116995410 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 || |||||||| || ||||| ||||| |||| ||||| || | ||| | Sbjct 116995411 CCCACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 116995470 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 |||| || ||||| | | || || || || || |||||||| | || | || || Sbjct 116995471 AAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGACCCG 116995530 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 | ||| | || ||| || ||| | || ||||||||||| ||| || || ||||| Sbjct 116995531 G-ACAGAGAGAAGAAAGGCACGCCTGCCTCCCCCGCGATGGCCTTGGCCAGCAGCGTCTT 116995589 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 |||||| || || ||| | || || | || |||||||| ||||| Sbjct 116995590 CCCCGTGCCCGGCGGGCCCACCAGCAGCACGCCCTTGGGGATCCTCGCACC 116995640 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 ||| ||||| ||||| ||||||||||| || ||||||| || || | ||| | || Sbjct 84115940 TTGGGGCCTCGGTGTGCCAGCGTTGAAAAGTGTTGGTGATGCATGTGTAAACCAGCGCTG 84115999 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 ||||||| || ||| ||| | | |||| |||||||||| ||| || || | ||| Sbjct 84116000 GGACATCAGATGGTACGTCCTAATGGCAGACTCAATGTCTTCCTTGTGTATTCCCACTGA 84116059 Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314 |||| ||| | ||||| || || |||| | | | ||| | ||| || |||||| Sbjct 84116060 AACCCTCATCAGCATGTGCTGAGGCCTTTCAACGACCTTCCCACCAAGCTTCAAGAGGTA 84116119 Query 117315 ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 | | |||||| || |||| ||||| ||| || |||| | ||||| Sbjct 84116120 AGACCTCTCCAGAGTTTTGAAGCCAAAGTAGTCATAGTCGAAATCCCT 84116167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 ||||| || || || || |||| || || || | | ||||| |||||||||||||| Sbjct 95645635 CGGTTAGTGGCAGCAATAACAATAATTCCAGTGTTGCCCTCGAAACCATCCATCTCAGTT 95645694 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGT 12869 | |||||||||| || || || | ||||||||| | | ||| | || | | Sbjct 95645695 AGTAGTTGATTGAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTT 95645754 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCACGGGC 12928 ||| | || || || |||||||| |||| || || || || || ||| | | || | Sbjct 95645755 TGCCTTCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCC 95645814 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| ||| | || || ||||| || || ||||| ||||||||||||||||| Sbjct 95645815 TTCTTGAAA-AGGTCACGAACTCTGGAAGCTCCAACACCAACAAACATCTCCACAAA 95645870 >seq2 Length=244442276 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| ||||| ||||| || || |||||||| || Sbjct 34131129 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCATTAGAGAAAGTGAGGCCCGGCATGAGGCC 34131070 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||||| ||||||||||| ||||| || || Sbjct 34131069 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 34131010 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| |||| || |||||||||||| Sbjct 34131009 GGCGAAGGCAACGAGGCGCTCGGCAAAG 34130982 >seq9 Length=159769782 Score = 134 bits (148), Expect = 2e-26 Identities = 305/451 (68%), Gaps = 6/451 (1%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCC-ATCGAGGCTGATATTCTCCA 127289 |||||| || || ||||||||||||||||| |||||||| ||| || ||| ||||| Sbjct 30987752 GTAGTCACCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCATC-AGCGAGATGAGCTCCA 30987694 Query 127290 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGA 127348 | | || || || || | ||| | || | | |||||| | | |||| || Sbjct 30987693 TCCAGTCGAAGGGATTGGTCACGTTGTACATCTTCTTGCACCCGAG-CGCCATGAGCAGG 30987635 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 127407 || || | ||| | |||||||||| ||| || |||||| |||| ||| | Sbjct 30987634 CGGTCGGCCACGAATTCAATGTACTGGCTCATGAGATCCCCGTTCATGCCGACGAGCGCG 30987575 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 ||| ||||| ||||| ||| |||| | ||| ||||| ||||| || ||||| | Sbjct 30987574 ACA-GGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACAGCGTCTGCGACGATCTC 30987516 Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTC 127527 | | | | || | | | | ||||| | | || | |||| || || || Sbjct 30987515 GCGTACGCGGGCCTCGTCGAGCTTGTTGCGGAGAAGCTCGTAGAGGAGGCAGGCGAAATC 30987456 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 |||||| ||||| || ||||||||||| || || |||||| || || |||||||| Sbjct 30987455 ACAGTGGAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAG 30987396 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 || |||||||| | |||||| || || || || || || |||||||| || ||||| || Sbjct 30987395 CCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGACCCCGAGAAGAATATGCCCTCGAC 30987336 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || ||||| |||| | ||||| || ||| Sbjct 30987335 GCAGGCGAAGGCAACGATGCGCTCAGCGAAG 30987305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505152419720