Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 161 2e-34 seq6 156 7e-33 seq9 131 3e-25 >seq2 Length=244442276 Score = 161 bits (178), Expect = 2e-34 Identities = 305/440 (69%), Gaps = 13/440 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| |||||||||| || ||| || ||||| | |||| ||||| Sbjct 34131414 CTTCTCAAAGAAGTTAGTCTTGCCCTGCAGGGAAATGAGCTCCATCCAGTCGAAGGGGTT 34131355 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| || || ||| |||| | ||| || || || || Sbjct 34131354 GGCGACGTTGTACATCTTCCTGTGCCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 34131295 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| || | | ||| || || | |||| ||||||||||| || | Sbjct 34131294 GATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACCAGCGCGACGGGGAGCGCGTCGCA 34131235 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | ||||| ||| || ||||| || |||| || |||| ||| ||| || | || Sbjct 34131234 AACGAACTCACGCTCGATGTCGACGGCGTCGGCAACGATCTCGCG-GACGCG---GGACT 34131179 Query 159888 C--CG-GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | || |||||||| || | |||| | || ||||||| || ||||||||||| || | Sbjct 34131178 CATCGAGCTTGCCCCGAAGGAGGTCATAAA---GGAGGCAGGCGAAGTCGCAGTGGAGGC 34131122 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||||||||| ||||||| ||| || || | ||||||||||||||| || ||| | Sbjct 34131121 CCTCGTCCCGGGAGATGAGCTCATTAGAGAAAGTGAGGCCCGGCATGAGGCCGCGCTTCT 34131062 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || Sbjct 34131061 TGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAG 34131003 Query 160064 GCCACGAGCCTCTCACCAAA 160083 || ||||| | ||| |||| Sbjct 34131002 GCAACGAGGCGCTCGGCAAA 34130983 >seq6 Length=174033170 Score = 156 bits (172), Expect = 7e-33 Identities = 488/744 (66%), Gaps = 30/744 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || || || ||||| | |||| ||||| Sbjct 122043437 CTTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTT 122043378 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||| || |||| | ||||| ||| |||| | ||| ||||| || || Sbjct 122043377 GGTCACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGGCGGTCGGCCACGAACTC 122043318 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | || || ||||| || || | Sbjct 122043317 GATGTACTGGCTCATGAGGTCCCCGTTCATGCCGACGAGGGAGACAGGGAGGGCGTCGCA 122043258 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATC-TGCGAGACACGTTCGTACC 159887 | ||||| ||| || ||||| || || | || ||| |||| |||| || || Sbjct 122043257 GACGAACTCGCGCTCGATGTCGACGGCGTCAGCGACGATCGTGCG---CACG--CGGGCC 122043203 Query 159888 CCG----GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 || |||||| | | || | | |||||||| || || ||||||||||| Sbjct 122043202 TCGTCGAGCTTGCTGCGTAGGACATCGT---AGAGGAGGCAGGCGAAATCGCAGTGCAGG 122043146 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| Sbjct 122043145 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTTC 122043086 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAA 160062 || |||||||| |||| |||| ||| | | | | || ||||| ||||| ||| || || Sbjct 122043085 TTCAGCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAA 122043027 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 || ||||| | ||| | || ||| | | | | | |||| | ||||||| | Sbjct 122043026 GGCAACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGCATGGCCCAGT 122042971 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGC----TCGACGGCGTTAAACAATCTGTCCTGC 160177 | ||| ||||| | || || || | |||| |||| || | | ||||| | Sbjct 122042970 CCGCC----TTGCGCCGGACCGCGGGCACCGTATCGATGGCGCGGAAGAGGCGGTCCTTC 122042915 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 || | || ||| || | | |||| ||||||||| || | ||| | || Sbjct 122042914 TCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTC 122042855 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTG 160297 |||||||| ||||| ||| |||||| |||||| |||||| || || Sbjct 122042854 TCGATGGCGATCTGGAAGCCGTAGAAGGCCCGCGCCTCGGCGACCTGCACGTCGGACATG 122042795 Query 160298 AACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 || | ||| | || || | || | ||||||| ||| || ||||| || | ||| Sbjct 122042794 AAGC-GGGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 122042736 Query 160357 GTGAGAGATGAAATGTCTCTCGTC 160380 |||||||||||| || | |||||| Sbjct 122042735 GTGAGAGATGAAGTGGCGCTCGTC 122042712 >seq9 Length=159769782 Score = 131 bits (144), Expect = 3e-25 Identities = 479/742 (65%), Gaps = 26/742 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| ||| || || || ||||| | |||| || || Sbjct 30987737 CTTCTCGAAGAAGTTGGTCTTCCCCATCAGCGAGATGAGCTCCATCCAGTCGAAGGGATT 30987678 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||| || |||| | ||||| ||| |||| | ||| ||||| ||||| Sbjct 30987677 GGTCACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGGCGGTCGGCCACGAATTC 30987618 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| | ||| | || | ||| || || | ||| || ||||| || || | Sbjct 30987617 AATGTACTGGCTCATGAGATCCCCGTTCATGCCGACGAGCGCGACAGGGAGGGCGTCGCA 30987558 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 | ||||| ||| || ||||| || || | || |||| || | || || | | Sbjct 30987557 GACGAACTCGCGCTCGATGTCGACAGCGTCTGCGACGATCT-CGCGTACGCGGGCCTCGT 30987499 Query 159888 CCGGCTTG---CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| | | || | || | |||||||| || || || ||||| || | Sbjct 30987498 CGAGCTTGTTGCGGAGAAGCTCGT------AGAGGAGGCAGGCGAAATCACAGTGGAGGC 30987445 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||| || || ||||||| ||||||||| | | ||||||||||||||| ||| ||| | Sbjct 30987444 CCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTTCT 30987385 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| ||| ||| | | || || || ||||| ||| || || Sbjct 30987384 TGAGCCAGAAGATGG-CGCAGAAGGACCCCGAGAAGAATATGCCCTCGACGCAGGCGAAG 30987326 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || |||| | |||| | || ||| | | | | | |||| | ||||||| || Sbjct 30987325 GCAACGATGCGCTCAGC----GAAGCGCTCCCCGCCGTCGATCCAGCGCATGGCCCAGTC 30987270 Query 160123 AGCCTTCTTTGCGATGCAC----GGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCT 160178 |||| ||||| | || |||| | |||| |||| |||| | ||||| || Sbjct 30987269 AGCC----TTGCGCCGGACCGCGGGCACGGTGTCGATGGCGCGGAACAGGCGGTCCTTCT 30987214 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | || ||| || | | |||| ||| ||||| || | ||| | || | Sbjct 30987213 CGACGTGGTCGCGGATGTAGGTCTCGAGCAGCAGCGAATACATCTCCGAGTGGATGTTCT 30987154 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 ||||||| ||||| ||| |||||| |||||| |||||| || ||| Sbjct 30987153 CGATGGCGATCTGGAAGCCGTAGAAGGCCCGCGCCTCGGCGACCTGCACGTCGGTCATGA 30987094 Query 160299 ACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGT 160358 | | | | || || | || | ||||||| ||| || ||||| || | ||||| Sbjct 30987093 AGCGGGAAGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCAGCGAAGAAGGCGAGCACGT 30987034 Query 160359 GAGAGATGAAATGTCTCTCGTC 160380 | |||||||| || | |||||| Sbjct 30987033 GGGAGATGAAGTGCCGCTCGTC 30987012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152546169520