Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq82 114 5e-20 seq5 111 6e-19 seq10 96.9 1e-14 seq1 96.9 1e-14 seq8 95.1 5e-14 seq3 87.8 7e-12 >seq82 Length=83778 Score = 114 bits (126), Expect = 5e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || || || ||||| || ||||| ||| || |||| |||| | | ||| Sbjct 72583 GTGCTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGCAAATCAGTCTCAAAGGCA 72524 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||||||||| || || || || || || ||||| || Sbjct 72523 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCTGGT 72464 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | |||||||| | ||||| | || || ||||||||||||||||||||||| | Sbjct 72463 CGCATTGCTGGCCTTGATGTTGAAAGGATCATCAATGAACCTACAGCAGCTGCTCTGTCT 72404 Query 451445 TATGGA 451450 |||||| Sbjct 72403 TATGGA 72398 >seq5 Length=223902240 Score = 111 bits (122), Expect = 6e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||||||||| ||||||||||||||||| || || || || || || |||||| Sbjct 22203284 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCA 22203343 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | ||||| | || || ||||||||||||||||| ||||| Sbjct 22203344 GGCCGCATTGCTGGCCTTGATGTTGAAAGGATCATCAATGAACCTACAGCAGCCGCTCTG 22203403 Query 451442 GCATATGGA 451450 | |||||| Sbjct 22203404 TCTTATGGA 22203412 Score = 96.9 bits (106), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || ||||| ||||| ||| ||||| || |||||| |||||||| Sbjct 12963553 GCAGTGATCACAGTCCCTGCTTACTTCAACGATTCACAAAGGACAGCAACCAAAGATGCT 12963494 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | | ||||| || ||||| ||||| || || ||||| | ||| Sbjct 12963493 GGCCGCATTGCTGGGCTGGAGGTTCTGCGTATTATAAATGAGCCCACCGCAGCATCACTA 12963434 Query 451442 GCATATGG 451449 |||||||| Sbjct 12963433 GCATATGG 12963426 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 248488 CATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATCA 248547 ||||||||||||||||| ||||| || |||| | ||| |||||||| | ||| Sbjct 17284010 CATGGACAAAAAGGAACTGTTGGGATGACTTACACTCAAGAGGATATGCCATGGACAATC 17283951 Query 248548 GAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTATG 248607 ||||| || || || ||| | ||| | |||||||||| ||| || | ||||||||||| Sbjct 17283950 GAAGGCATTACACCTGATATTATTGTGAATCCACATGCTATTCCATCCCGTATGACTATT 17283891 Query 248608 GGACA 248612 || || Sbjct 17283890 GGGCA 17283886 >seq10 Length=150982314 Score = 96.9 bits (106), Expect = 1e-14 Identities = 136/191 (71%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| |||| || || || || ||||||||| ||||| || ||||||||||||||| Sbjct 22240497 GCAGTGGTTACAGTCCCAGCATACTTCAATGATTCACAAAGGACAGCAACTAAAGATGCT 22240556 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | ||||| || | | ||||| || |||||||||||||| || || || | | Sbjct 22240557 GGCCGCATTGCAGGACTGGAAGTTCTCCGTATTATTAATGAACCAACTGCTGCATCGTTG 22240616 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| | | | |||||| | || ||| | ||| |||| |||||||| Sbjct 22240617 GCCTATGGTTTCG-------AGAAGAAAAATAATGAAACA--ATTCTAGTGTTTGATTTG 22240667 Query 451502 GGTGGAGGAAC 451512 || || ||||| Sbjct 22240668 GGAGGCGGAAC 22240678 >seq1 Length=307041717 Score = 96.9 bits (106), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || ||||| ||||| ||| ||||| || |||||| |||||||| Sbjct 268000810 GCAGTGATCACAGTCCCTGCTTACTTCAACGATTCACAAAGGACAGCAACCAAAGATGCT 268000869 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | | ||||| || ||||| ||||| ||||| || || | ||| Sbjct 268000870 GGCCGCATTGCTGGGCTGGAGGTTCTGCGTATTATAAATGAGCCTACCGCCGCATCACTA 268000929 Query 451442 GCATATGG 451449 |||||||| Sbjct 268000930 GCATATGG 268000937 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 248488 CATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATCA 248547 ||||||||||||||||| ||||| || |||| | ||| |||||||| | ||| Sbjct 254671831 CATGGACAAAAAGGAACTGTTGGGATGACTTACACTCAAGAGGATATGCCATGGACAATC 254671772 Query 248548 GAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTATG 248607 ||||| || || || ||| | ||| | |||||||||| ||| || | ||||||||||| Sbjct 254671771 GAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTCCATCCCGTATGACTATT 254671712 Query 248608 GGACA 248612 || || Sbjct 254671711 GGGCA 254671707 >seq8 Length=181122637 Score = 95.1 bits (104), Expect = 5e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 219205 TTAATCCCAATTTATATGAGAATGGAAAAGTATGTCTTAGTCTATTAGGAACATGGACTG 219264 ||||||| ||| ||||||||||||||| ||| |||||||| || || || || ||| || Sbjct 29789022 TTAATCCAAATCTATATGAGAATGGAAGAGTGTGTCTTAGCCTGTTGGGTACCTGGGATG 29789081 Query 219265 GTTCAAATAGTGAAAAATGGAATTCTAAAACATCTACTATGCTTCAAGTAATAGTTTCTA 219324 || | | |||| || ||||| | | ||| || ||||| ||||| | || || | Sbjct 29789082 GTAGAGGTTGTGAGAAGTGGAACCCAGCACAATCAACAATGCTGCAAGTTCTTGTCTCCA 29789141 Query 219325 TTCAAAGTTTAATTTTAAATGAAGAACCATATTTTAATGAACCTGTATAT 219374 ||||| | | ||||| ||||| | ||||||| || || || | |||| Sbjct 29789142 TTCAAGCTCTCATTTTGAATGAGAAGCCATATTACAACGAGCCAGGATAT 29789191 >seq3 Length=235667834 Score = 87.8 bits (96), Expect = 7e-12 Identities = 139/199 (70%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 451314 TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTA 451373 |||| | ||||| |||| || || || || ||||||||| ||||| || |||||||| Sbjct 98751431 TTACAAAAGCAGTGGTTACAGTACCAGCATACTTCAATGATTCACAAAGGACAGCAACTA 98751490 Query 451374 AAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAG 451433 ||||||| || | ||||| || | | ||||| || ||||| |||||||| || || | Sbjct 98751491 AAGATGCTGGCCGCATTGCAGGACTGGAAGTTCTCCGTATTATAAATGAACCAACTGCTG 98751550 Query 451434 CTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTAT 451493 | | | || ||||| | | | |||||| | || ||| | ||| |||| | Sbjct 98751551 CATCATTGGCCTATGGGTTCG-------AGAAGAAAAATAATGAAACA--ATTCTAGTGT 98751601 Query 451494 TTGATTTTGGTGGAGGAAC 451512 ||||||| || || || || Sbjct 98751602 TTGATTTGGGAGGTGGTAC 98751620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975711641190836