Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2 113 3e-19 seq1 109 4e-18 seq10 107 1e-17 seq3 100 2e-15 seq5 87.8 1e-11 >seq2 Length=244442276 Score = 113 bits (124), Expect = 3e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | ||||| |||||||| || ||||| ||||| |||| ||| | || |||||| Sbjct 195894957 CCATAAGACAAAGCTGCAGCAGTGGGCTCATTGATAATCCTCATAACTTCCAGTCCAGCA 195895016 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || || || ||||| || || || || | ||| | ||| |||||||| || || |||||| Sbjct 195895017 ATCCTACCAGCATCCTTGGTAGCCTGGCGTTGAGCATCATTAAAATAAGCTGGGACAGTA 195895076 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTA 518353 ||||| || | || ||| || |||| ||||| ||| |||| ||||| ||| Sbjct 195895077 ATAACAGCCTTAGAGACTGTCTTGCCAAGGTAAGCCTCTGCAGTTTCCTTCATCTTA 195895133 >seq1 Length=307041717 Score = 109 bits (120), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGTT 518166 ||||| ||| ||||| || | ||||| || || |||||| | || | | ||||| Sbjct 155961896 ACATCGAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCGACGCTGGTT 155961837 Query 518167 T-----TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || ||||||||||| |||| ||||||||| ||||| ||||| || || | || Sbjct 155961836 GCCTTCTTGTCAAGACCATAGGCAATAGCAGCAGCGGTTGGCTCATTGATGATACGCAGC 155961777 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| || |||||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 155961776 ACATTGAGGCCAGCAATCACCCCAGCATCCTTCGTGGCCTGCCTCTGTGAGTCGTTGAAG 155961717 Query 518282 TATGCAGGAACAGTAATAACGGCAT 518306 || ||||| || || | ||| |||| Sbjct 155961716 TAGGCAGGGACCGTGACAACAGCAT 155961692 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| |||| |||||| || | | || || || || ||||| ||||| | || ||| Sbjct 268000949 TTTTTCTCAAAACCATATGCTAGTGATGCGGCGGTAGGCTCATTTATAATACGCAGAACC 268000890 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | || |||||||| | || |||||||| || ||| |||||||||||||| || || Sbjct 268000889 TCCAGCCCAGCAATGCGGCCAGCATCTTTGGTTGCTGTCCTTTGTGAATCGTTGAAGTAA 268000830 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || || || || || Sbjct 268000829 GCAGGGACTGTGATCACTGC 268000810 >seq10 Length=150982314 Score = 107 bits (118), Expect = 1e-17 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 || ||||||| |||||| || |||| |||||| | || | | |||| || | || Sbjct 22240691 AGATACATCAAAGGTTCCGCCTCCCAAATCAAACACTAGAA---TTGTTTCATTATTTT- 22240636 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 | || || | |||||| || || | ||||||||||||||||||||||| | | ||| Sbjct 22240635 --TCTTCTCGAAACCATAGGCCAACGATGCAGCAGTTGGTTCATTAATAATACGGAGAAC 22240578 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | || || ||||| | || ||||||||||| ||| ||||||||||| || || || Sbjct 22240577 TTCCAGTCCTGCAATGCGGCCAGCATCTTTAGTTGCTGTCCTTTGTGAATCATTGAAGTA 22240518 Query 518284 TGCAGGAACAGTAA 518297 ||| || || |||| Sbjct 22240517 TGCTGGGACTGTAA 22240504 >seq3 Length=235667834 Score = 100 bits (110), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 518165 |||||| ||| ||||| || | |||||| || || |||||| | || | | |||| Sbjct 126863582 ACATCAAAGGTACCACCTCCAAGATCAAAGATGAGGACATTCTTCTCACCGACACTGGTA 126863641 Query 518166 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | || ||||||||||| || | ||| ||||| ||||| || || || || | || Sbjct 126863642 GCCTTCTTGTCAAGACCATAGGCGATAGCTGCAGCTGTTGGCTCGTTGATGATACGCAGC 126863701 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 |||||||| |||||||| || ||||| || ||||| || || ||||| || || || Sbjct 126863702 ACATTAAGGCCAGCAATCACCCCAGCATCCTTTGTGGCCTGCCTCTGTGAGTCATTGAAG 126863761 Query 518282 TATGCAGGAACAGTAATAACGGCAT 518306 || ||||| || || | || |||| Sbjct 126863762 TAGGCAGGGACTGTGACCACAGCAT 126863786 Score = 96.9 bits (106), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| ||||| |||| |||||| | || | | |||| || | || | Sbjct 98751629 ACATCAAAGGTACCACCTCCCAAATCAAACACTAGAA---TTGTTTCATTATTTT---TC 98751576 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || | ||||| || || | ||||||||||||||||| ||||| | | ||| | Sbjct 98751575 TTCTCGAACCCATAGGCCAATGATGCAGCAGTTGGTTCATTTATAATACGGAGAACTTCC 98751516 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || ||||| | || ||||||||||| ||| ||||||||||| || || ||||| Sbjct 98751515 AGTCCTGCAATGCGGCCAGCATCTTTAGTTGCTGTCCTTTGTGAATCATTGAAGTATGCT 98751456 Query 518288 GGAACAGTAA 518297 || || |||| Sbjct 98751455 GGTACTGTAA 98751446 >seq5 Length=223902240 Score = 87.8 bits (96), Expect = 1e-11 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| |||| |||||| || | | || || || || ||||| ||||| | || ||| Sbjct 12963414 TTTTTCTCAAAACCATATGCTAGTGATGCTGCGGTGGGCTCATTTATAATACGCAGAACC 12963473 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | || |||||||| | || |||||||| || ||| |||||||||||||| || || Sbjct 12963474 TCCAGCCCAGCAATGCGGCCAGCATCTTTGGTTGCTGTCCTTTGTGAATCGTTGAAGTAA 12963533 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTT 518315 ||||| || || || || || | || |||| Sbjct 12963534 GCAGGGACTGTGATCACTGCCTTTGTGACTT 12963564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780809150580502