Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq9 136 5e-27 seq2 136 5e-27 >seq6 Length=174033170 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 122043005 CTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 122043064 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||| |||||||| || |||||||| || ||| |||||||||||| Sbjct 122043065 CTGCGCCATCTTTTGGCTGAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 122043124 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 122043125 GCTCATCTCCCGCGACGAGGGCCTGCAC 122043152 Score = 114 bits (126), Expect = 2e-20 Identities = 272/409 (67%), Gaps = 14/409 (3%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | ||||| || ||||||||| || || | ||| | || || ||||| Sbjct 86009239 ATCAAATCTCCCTGGTCGTAGGAGCGCGGAGTCCAGCACATCGGGCCTGTTGGTGGCGGC 86009180 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 | |||| | ||| | | | | | || ||||||||||| ||||| ||||||||||| Sbjct 86009179 AAGCACAATGACACCGCTGTTGCCAGCGAAGCCATCCATCTCCGTCAAGAGCTGGTTAAT 86009120 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCAC 16063 || || || | || ||||| | | |||| || |||| ||| ||| |||| || Sbjct 86009119 GGTCTGCTCTCTCTCGTCATTACC---CCCACCAAGTCCGGCACCGCGCTGCCTTCCAAC 86009063 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAA 16119 |||||||||||||||||||||||| ||||| || ||| || || | || | Sbjct 86009062 GGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTC----TCGA 86009007 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 |||| || || || | ||| || ||||| || || | ||| || || | | ||| | Sbjct 86009006 AGAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCAGAGGCAG 86008947 Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 || || |||||| || | || || || | ||| || || || || ||||| | Sbjct 86008946 CGCAGGAGAAGAAGGGCACCCCGGCCTCCCCAGCGACGGCACGCGCAAGGAGGGTCTTCC 86008887 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 | || || ||| || ||||||| ||| || |||||||| || Sbjct 86008886 CGGTCCCAGGCGGGCCGACGAGGAGACAACCCTTGGGGATCTTGGCTCC 86008838 Score = 104 bits (114), Expect = 3e-17 Identities = 245/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || || || | ||| | ||| ||| | || ||| | || || || || || Sbjct 95645589 ATCAAAACGCCCAGGTCTAAGTAAAGCGGAATCCAATATGTCAGCCCGGTTAGTGGCAGC 95645648 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 || |||| ||| || || | | || |||||||||||||| || | || || || | Sbjct 95645649 AATAACAATAATTCCAGTGTTGCCCTCGAAACCATCCATCTCAGTTAGTAGTTGATTGAG 95645708 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 16066 ||| || |||| ||||||||| | | ||| | || | |||| |||| || || Sbjct 95645709 AGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGC 95645768 Query 16067 ATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGAT 16125 |||||| ||||||| || || ||||| || ||| | | | | ||| ||| || | Sbjct 95645769 ATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGGT 95645827 Query 16126 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 16185 | || || | || || ||||||||||||||||||||||| | | | ||| ||| Sbjct 95645828 CACGAACTCTGGAAGCTCCAACACCAACAAACATCTCCACAAATTCAGAACCTGAA-ATT 95645886 Query 16186 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 16244 | || || || || || || || ||||| || ||| || | ||| |||||||| Sbjct 95645887 GAGAAAAATGGCACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCAAAGTTTTACCCGTC 95645946 Query 16245 CCTGG 16249 || || Sbjct 95645947 CCAGG 95645951 >seq9 Length=159769782 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| |||||||| || | || || || || || ||||| || |||||||| || ||||| Sbjct 30987305 CTTCGCTGAGCGCATCGTTGCCTTCGCCTGCGTCGAGGGCATATTCTTCTCGGGGTCCTT 30987364 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 30987365 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 30987424 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || || ||||| |||||| Sbjct 30987425 GCTCATCTCCCGCGATGAGGGCCTCCAC 30987452 Score = 105 bits (116), Expect = 8e-18 Identities = 245/364 (67%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | ||| ||| | ||| ||| | || || || || || Sbjct 113593984 TCAAAGCGCCCAGGTCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 113594043 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| ||| || || | | ||||||||||||||||| || | || || || | | Sbjct 113594044 ATAACAATAATTCCGGTGTTGCCCTCAAAACCATCCATCTCAGTTAGTAGTTGATTTAGA 113594103 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 16067 || || |||| ||||||||| | | ||| | || | |||| |||| || ||| Sbjct 113594104 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 113594163 Query 16068 TCAATCTCATCAATGAAGACGATGCATGG-TTGATTTTCGCGAGCGACTTCAAAGAGATC 16126 ||||| ||||| | || || ||||| || | | | | | | ||| ||| || || Sbjct 113594164 TCAATTTCATCGACAAACACTATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGGTC 113594222 Query 16127 CCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 16186 ||||| | || || ||||||||||||||||||||||| | | | ||| |||| Sbjct 113594223 ACGTACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAACCTGAA-ATTG 113594281 Query 16187 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 16245 || || || || || || || ||||| || ||| || | ||| ||||| || | Sbjct 113594282 AGAAAAATGGTACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTCC 113594341 Query 16246 CTGG 16249 | || Sbjct 113594342 CAGG 113594345 >seq2 Length=244442276 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||| ||||| ||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 34130982 CTTTGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 34131041 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| ||||| || || Sbjct 34131042 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACTTTCTCTAATGA 34131101 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| |||||| Sbjct 34131102 GCTCATCTCCCGGGACGAGGGCCTCCAC 34131129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740328272240