Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 seq2 113 5e-20 seq9 93.3 5e-14 seq3 86.0 7e-12 seq8 84.2 3e-11 >seq6 Length=174033170 Score = 120 bits (132), Expect = 4e-22 Identities = 317/474 (67%), Gaps = 14/474 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || || Sbjct 116995237 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCAGGCCGGTTCGTGGCC 116995296 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| || | || | || | ||| |||||||| || || || |||||||| Sbjct 116995297 GCGATGACGACGACTCCGCTGTCCCCGCTGAACCCGTCCATCTCCGTCAGCAGCTGGTTC 116995356 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| |||||| || || || | ||||| |||| || Sbjct 116995357 AGCGTCTGCTCCCGCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGGCGGCCC 116995413 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| |||| ||||| |||||| |||| | ||| Sbjct 116995414 ACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAAG 116995473 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG--CAG 11797 || || || || ||| ||| || || || ||||||||||| | ||| | ||| | | Sbjct 116995474 AGGTCCCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACT---CGGACCCG 116995530 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 ||| || | ||| || || | ||| || |||||||| || || || ||||| Sbjct 116995531 GACAGAGAGAAGAAAGGCACGCCTGCCTCCCCCGCGATGGCCTTGGCCAGCAGCGTCTTC 116995590 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA-CCACTTCCAAA 11915 ||||| || || | || | || || |||| ||||||| | ||| |||| || Sbjct 116995591 CCCGTGCCCGGCGGGCCCACCAGCAGCACGCCCTTGGGGATCCTCGCACCCACCGCC-GT 116995649 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| Sbjct 116995650 GAACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAAGTCCTGCTTGGC 116995703 Score = 100 bits (110), Expect = 3e-16 Identities = 252/382 (66%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650 |||| || ||||| || || | |||||||| || ||||| || | ||| || || Sbjct 86009153 CGAAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCTCTCTCGTCATTACC-- 86009096 Query 11651 GCATACCACCTGCCGAAC---GCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGA 11707 | |||| | | | || ||| | | || || || ||||||||||| ||||| || | Sbjct 86009095 -CCCACCAAGTCCGGCACCGCGCTGCCTTCCAACGGCATCAATCTCATCAATGAAGACAA 86009037 Query 11708 TACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACAC 11767 | || || ||||| |||| ||||| || || || || | || || |||| Sbjct 86009036 TGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCGCGCACCCTGGAGGCACCGACAC 86008977 Query 11768 CTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCAC 11827 | ||||| | ||| ||||| | | ||||| || | |||||| || | ||| | Sbjct 86008976 CGACGAAGAGCTCGACGAACTCAGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCTCCC 86008917 Query 11828 CAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGC 11887 |||||| ||| || || ||||| ||||| || || ||||| | || |||| || | Sbjct 86008916 CAGCGACGGCACGCGCAAGGAGGGTCTTCCCGGTCCCAGGCGGGCCGACGAGGAGACAAC 86008857 Query 11888 CACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAA 11947 | |||||||||||| || | ||| || || ||||||||||| ||||| | Sbjct 86008856 CCTTGGGGATCTTGGCTCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCCACGA 86008797 Query 11948 TCTCCTCAAGTTCCTCCTTGGC 11969 ||||| || || |||||| Sbjct 86008796 CCTCCTGCAGCTCGAGCTTGGC 86008775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 122043151 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCG 122043092 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| |||||||||||||| || || || || |||||||||||||| || ||| Sbjct 122043091 CGCTTCTTCAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 122043032 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || | || ||||| || || Sbjct 122043031 GCGAAGGCAACGAGGCGCTCGGCGAA 122043006 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| || |||| ||||||||||| || |||||||||||||| || || || Sbjct 84113485 CGTCGACTGTAAATATTAGATGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGA 84113544 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGA 109839 ||||||||| |||||||| ||||| | |||||| Sbjct 84113545 CTAGTGGAAGCAGTGGGCATTGGAGCAACAAGAAGA 84113580 >seq2 Length=244442276 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || ||||| ||||||||||||||| ||| || || |||||||| || Sbjct 34131128 TGGAGGCCCTCGTCCCGGGAGATGAGCTCATTAGAGAAAGTGAGGCCCGGCATGAGGCCG 34131069 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 34131068 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 34131009 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA-AGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| || | || ||||| ||||| | || | ||||| ||| | ||||| Sbjct 34131008 GCGAAGGCAACGAGGCGCTCGGCAAAGCGCTCCCCGC-CGTCGATCCAGCGCATGGCCCA 34130950 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || |||||| || || | |||||| |||| |||||| Sbjct 34130949 GTCGGCCTTGCGGCGTACGGCGGGGACGGTTTCGATGGC 34130911 >seq9 Length=159769782 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| || |||| |||||||||||| ||||||||||||||||| || || || Sbjct 15727620 CGTCGACTGTATATATTAGACGTGTAGGGTTCAAAACACTCATTGTTGCCAAGAATCTGA 15727561 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGA 109839 ||||||||| |||||||| ||||| | |||||| Sbjct 15727560 CTAGTGGAAGCAGTGGGCATTGGAGCAACAAGAAGA 15727525 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||||||||||| || |||| || || |||||||| || Sbjct 30987451 TGGAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCG 30987392 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || ||||| |||||||| || ||| Sbjct 30987391 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGACCCCGAGAAGAATATGCCCTCGACGCAG 30987332 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || | | |||||||| || Sbjct 30987331 GCGAAGGCAACGATGCGCTCAGCGAA 30987306 >seq3 Length=235667834 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 |||||||| |||||||||||||||||| |||||||||||||||| |||||||| || || Sbjct 171735357 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGAGACCTGTA 171735298 Query 136776 TGGG 136779 |||| Sbjct 171735297 TGGG 171735294 >seq8 Length=181122637 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 169614350 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 169614295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974034292600