Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 140 4e-28 seq2 123 3e-23 seq9 107 2e-18 >seq6 Length=174033170 Score = 140 bits (154), Expect = 4e-28 Identities = 304/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | ||||| || ||||||||| || || | ||| | || || ||||| Sbjct 86009239 ATCAAATCTCCCTGGTCGTAGGAGCGCGGAGTCCAGCACATCGGGCCTGTTGGTGGCGGC 86009180 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | |||| | ||| |||| | | | || ||||||||||| ||||| || |||||| Sbjct 86009179 AAGCACAATGACACCGCTGTTGCC--AGCGAAGCCATCCATCTCCGTCAAGAGCTGGTTA 86009122 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 || || || || | || ||||| | | |||| || |||| ||| ||| |||| Sbjct 86009121 ATGGTCTGCTCTCTCTCGTCATTACC---CCCACCAAGTCCGGCACCGCGCTGCCTTCCA 86009065 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 ||||||||||||||||||||||||||||| || || || | ||| | || ||| Sbjct 86009064 ACGGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAG 86009005 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 || ||||| ||||| ||| || ||||| || || | ||| || || | | ||| | Sbjct 86009004 AGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCAGAGGCAGCG 86008945 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || || |||||| || | || || || | ||| || || || || ||||| || Sbjct 86008944 CAGGAGAAGAAGGGCACCCCGGCCTCCCCAGCGACGGCACGCGCAAGGAGGGTCTTCCCG 86008885 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9608 || || ||| || ||||||| |||| || |||||||| || | ||| Sbjct 86008884 GTCCCAGGCGGGCCGACGAGGAGACAACCCTTGGGGATCTTGGCTCCGAGCGCGGTGTAC 86008825 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | || || | |||||| |||||||| | ||| Sbjct 86008824 TTGTCGGGGTTCTTGAGGAAATCCACGACCTC 86008793 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 122043152 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 122043093 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| |||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 122043092 GCGCTTCTTCAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 122043033 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || |||| ||||||||||||||| Sbjct 122043032 GGCGAAGGCAACGAGGCGCTCGGCGAAG 122043005 Score = 113 bits (124), Expect = 5e-20 Identities = 245/364 (67%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || || || | ||| | ||| ||| | || ||| | || || || || || Sbjct 95645589 ATCAAAACGCCCAGGTCTAAGTAAAGCGGAATCCAATATGTCAGCCCGGTTAGTGGCAGC 95645648 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || |||| ||| || || | || |||||||||||||| || | ||||| || | Sbjct 95645649 AATAACAATAATTCCAGTGTTGCCCTCGAAACCATCCATCTCAGTTAGTAGTTGATTGAG 95645708 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 ||| || |||| ||||||||| | | ||| | || | |||| |||| || || Sbjct 95645709 AGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGC 95645768 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| ||||||| || || || || || ||| || ||| | | || || || Sbjct 95645769 ATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGGTC 95645828 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9493 ||||| || || || ||||||||||||||||||||||| | | | ||| |||| Sbjct 95645829 ACGAACTCTGGAAGCTCCAACACCAACAAACATCTCCACAAATTCAGAACCTGAA-ATTG 95645887 Query 9494 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9552 || || || || || || || ||||| || ||| || | ||| |||||||| | Sbjct 95645888 AGAAAAATGGCACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCAAAGTTTTACCCGTCC 95645947 Query 9553 CTGG 9556 | || Sbjct 95645948 CAGG 95645951 >seq2 Length=244442276 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || ||||| ||||| ||||| |||||||| || Sbjct 34131129 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCATTAGAGAAAGTGAGGCCCGGCATGAGGCC 34131070 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 34131069 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 34131010 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || |||| ||||||||||| ||| Sbjct 34131009 GGCGAAGGCAACGAGGCGCTCGGCAAAG 34130982 >seq9 Length=159769782 Score = 107 bits (118), Expect = 2e-18 Identities = 243/363 (67%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | ||| ||| | ||| ||| | || || || || || Sbjct 113593984 TCAAAGCGCCCAGGTCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 113594043 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| ||| || || | ||||||||||||||||| || | ||||| || | | Sbjct 113594044 ATAACAATAATTCCGGTGTTGCCCTCAAAACCATCCATCTCAGTTAGTAGTTGATTTAGA 113594103 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 9374 || || |||| ||||||||| | | ||| | || | |||| |||| || ||| Sbjct 113594104 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 113594163 Query 9375 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 9434 ||||| ||||| | || || || || || || || ||| | | || || || Sbjct 113594164 TCAATTTCATCGACAAACACTATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAAAGGTCA 113594223 Query 9435 CGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG- 9493 || || || || || ||||||||||||||||||||||| | | | ||| |||| Sbjct 113594224 CGTACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAACCTGAA-ATTGA 113594282 Query 9494 GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACC 9553 || || || || || || || ||||| || ||| || | ||| ||||| || || Sbjct 113594283 GAAAAATGGTACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTCCC 113594342 Query 9554 TGG 9556 || Sbjct 113594343 AGG 113594345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978830939080