Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 seq8 84.2 3e-11 seq2 84.2 3e-11 >seq1 Length=307041717 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 182994 CTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGTATGAAG 183053 |||||||||| |||||||||||||||||||||||||| ||||| |||||| || | |||| Sbjct 83201691 CTTACAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGTCCCTCAGACGGAGGAAG 83201750 Query 183054 CTACCGCTGAA 183064 || | ||||| Sbjct 83201751 CTCGCACTGAA 83201761 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 126591 CGTATACCAGAAATTGGAGACAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 126649 || |||||| ||||||||||||| ||| | | || |||| | ||||||||||| ||| Sbjct 254671867 CGAATACCACAAATTGGAGACAAGTTTAGCAGTAGGCATGGAC-AAAAAGGAACTGTTGG 254671809 Query 126650 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATC--AGGTATGACCCCCGATATT 126707 |||| ||| | ||||| |||||||| | |||||| ||| || || || |||||| Sbjct 254671808 GATGACTTACACTCAAGAGGATATGCC--ATGGACAATCGAAGGCATCACACCTGATATT 254671751 Query 126708 ATAATTAATCCAAATTGTATACCGTCAAGAATGACCAT 126745 || | |||||| || ||| || || | ||||| || Sbjct 254671750 ATTGTGAATCCACATGCTATTCCATCCCGTATGACTAT 254671713 >seq8 Length=181122637 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 182994 CTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGTATGAAG 183053 |||||||||| |||||||||||||||||||||||||| ||||| |||| | || | |||| Sbjct 30873097 CTTACAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGTCCCTCGGACGGAGGAAG 30873038 Query 183054 CTACCGCTGAA 183064 || | ||||| Sbjct 30873037 CTCGCACTGAA 30873027 >seq2 Length=244442276 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 182994 CTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGTATGAAG 183053 |||||||||| |||||||||||||||||||||||||| ||||| |||| | || | |||| Sbjct 188007943 CTTACAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGTCCCTCGGACGGAGGAAG 188008002 Query 183054 CTACCGCTGAA 183064 || | ||||| Sbjct 188008003 CTCGCACTGAA 188008013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658401002579320