Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-20 seq10 105 5e-17 seq82 102 7e-16 seq1 100 2e-15 seq5 98.7 8e-15 seq2 98.7 8e-15 >seq3 Length=235667834 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | || ||||||||||| || ||||| |||||| | ||| | Sbjct 98751428 AAATTACAAAAGCAGTGGTTACAGTACCAGCATACTTCAATGATTCACAAAGGACAGCAA 98751487 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 ||||||||||||| || ||||| ||||| | ||||| |||||||| |||||||| |||| Sbjct 98751488 CTAAAGATGCTGGCCGCATTGCAGGACTGGAAGTTCTCCGTATTATAAATGAACCAACTG 98751547 Query 550509 CTGCTGCACTTGCATATGG 550527 |||| || | || ||||| Sbjct 98751548 CTGCATCATTGGCCTATGG 98751566 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || || || ||||||||||| | || || || || |||| Sbjct 126863786 ATGCTGTGGTCACAGTCCCTGCCTACTTCAATGACTCACAGAGGCAGGCCACAAAGGATG 126863727 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| |||||||| |||||||| || ||||| ||||| || || || ||||| || Sbjct 126863726 CTGGGGTGATTGCTGGCCTTAATGTGCTGCGTATCATCAACGAGCCAACAGCTGCAGCTA 126863667 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| ||||| || Sbjct 126863666 TCGCCTATGGTCTTGACAA 126863648 >seq10 Length=150982314 Score = 105 bits (116), Expect = 5e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | || || |||||||| || ||||| |||||| | ||| |||||||||||| Sbjct 22240497 GCAGTGGTTACAGTCCCAGCATACTTCAATGATTCACAAAGGACAGCAACTAAAGATGCT 22240556 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGC 550512 || || ||||| ||||| | ||||| |||||||| |||||||| |||||||| Sbjct 22240557 GGCCGCATTGCAGGACTGGAAGTTCTCCGTATTATTAATGAACCAACTGCTGC 22240609 >seq82 Length=83778 Score = 102 bits (112), Expect = 7e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| ||||| ||||| ||||| | || ||||| || || || |||||| Sbjct 72526 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCT 72467 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| ||||| | || |||||||||||||| || ||||| || Sbjct 72466 GGTCGCATTGCTGGCCTTGATGTTGAAAGGATCATCAATGAACCTACAGCAGCTGCTCTG 72407 Query 550520 GCATATGGA 550528 | |||||| Sbjct 72406 TCTTATGGA 72398 >seq1 Length=307041717 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || || || || || || || || |||||| | ||| || ||||||||| Sbjct 268000810 GCAGTGATCACAGTCCCTGCTTACTTCAACGATTCACAAAGGACAGCAACCAAAGATGCT 268000869 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| || | ||||| |||||||| ||||| ||||| || || |||| Sbjct 268000870 GGCCGCATTGCTGGGCTGGAGGTTCTGCGTATTATAAATGAGCCTACCGCCGCATCACTA 268000929 Query 550520 GCATATGGACTTGATAAA 550537 |||||||| |||| ||| Sbjct 268000930 GCATATGGTTTTGAGAAA 268000947 >seq5 Length=223902240 Score = 98.7 bits (108), Expect = 8e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || || || || || || || |||||| | ||| | Sbjct 12963564 AAGTCACAAAGGCAGTGATCACAGTCCCTGCTTACTTCAACGATTCACAAAGGACAGCAA 12963505 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| || | ||||| |||||||| ||||| || || | Sbjct 12963504 CCAAAGATGCTGGCCGCATTGCTGGGCTGGAGGTTCTGCGTATTATAAATGAGCCCACCG 12963445 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 | || |||| |||||||| |||| ||| Sbjct 12963444 CAGCATCACTAGCATATGGTTTTGAGAAA 12963416 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| ||||| ||||| ||||| | || ||||| || || || ||||| Sbjct 22203284 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCA 22203343 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| ||||| | || |||||||||||||| || || || || Sbjct 22203344 GGCCGCATTGCTGGCCTTGATGTTGAAAGGATCATCAATGAACCTACAGCAGCCGCTCTG 22203403 Query 550520 GCATATGGA 550528 | |||||| Sbjct 22203404 TCTTATGGA 22203412 >seq2 Length=244442276 Score = 98.7 bits (108), Expect = 8e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||||||||| | ||||| || ||||| || |||||| Sbjct 195895084 GCTGTTATTACTGTCCCAGCTTATTTTAATGATGCTCAACGCCAGGCTACCAAGGATGCT 195895025 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||||| | ||| | | ||||||||||| || |||||||| || | Sbjct 195895024 GGTAGGATTGCTGGACTGGAAGTTATGAGGATTATCAATGAGCCCACTGCTGCAGCTTTG 195894965 Query 550520 GCATATGGA 550528 | |||||| Sbjct 195894964 TCTTATGGA 195894956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029281879835830