Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 246 6e-60 seq9 208 1e-48 seq2 206 5e-48 >seq6 Length=174033170 Score = 246 bits (272), Expect = 6e-60 Identities = 578/862 (67%), Gaps = 23/862 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 122043455 CTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAGATGAGCTC 122043396 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||||| ||| |||| | | || || || | | ||| Sbjct 122043395 CATCCAGTCGAAGGGGTTGGTCACGTTGTACATCTTCTTG-CAC-CCGAGCGCCATGAGC 122043338 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || || ||| |||||||||| | ||||||| ||||||||| | |||| Sbjct 122043337 AGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCCCCGTTCATGCCGACGAGG 122043278 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 || || || | || | || ||||| ||| || | ||||| || | || ||| Sbjct 122043277 GAGACAGGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCAGCGACGATC 122043218 Query 48077 -TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||| | |||||| ||| | | ||| |||| ||| | | ||||| | |||||| Sbjct 122043217 GTGCGCA-CGCGGGCCTCGTCGAGCTTGCTGCGTAGGACATCG---TAGAGGAGGCAGGC 122043162 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 || || | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || || Sbjct 122043161 GAAATCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 122043102 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| ||| | || || ||||| || || || ||| ||||| |||||||||||||| Sbjct 122043101 CATGAGCCCGCGCTTCTTCAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 122043042 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCC 48314 ||| || ||||| || ||| | ||| | |||||| | | | | ||||| Sbjct 122043041 CTCGACGCAGGCGAAGGCAACGAGGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCC 122042986 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 || | |||||||| ||||| | || |||| ||| || ||||| ||||||| Sbjct 122042985 AGCGCATGGCCCAGTCCGCCTTGCGCCGGACCGCGGGCACCGTATCGATGGCGCGGAAGA 122042926 Query 48375 ---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | | ||| ||| | |||| | ||||| ||||||| | |||||||| Sbjct 122042925 GGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCT 122042869 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||||||||||| ||||| |||| Sbjct 122042868 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCGCGCCTCGGCGACCT 122042809 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || | ||| | | || ||||| || || || || || || || | Sbjct 122042808 GCACGTCGGACATGAAGCGGGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGA 122042749 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG---CATTCCAGC 48608 ||||||| || || || | ||| |||||||||| | ||| || | | | |||| Sbjct 122042748 AGAAGGCGAGCACGTGAGAGATGAAGTGGCGCTCGTCGGGGGACAGCGCCTCGTCCCAGT 122042689 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | | |||| ||||| || || || | |||||||||||||| | || || | Sbjct 122042688 GCCGGGCGTCGGCAGAGAGGTCAACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCT 122042629 Query 48669 TGTACATGCCCCATATGTCCGG 48690 |||| | |||| || | ||| Sbjct 122042628 TGTAGAACTCCCAGATCTGCGG 122042607 >seq9 Length=159769782 Score = 208 bits (230), Expect = 1e-48 Identities = 574/864 (66%), Gaps = 27/864 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| ||||| | ||||| |||||||| ||||||||| || ||||||| ||| Sbjct 30987755 CTGGTAGTCACCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCATCAGCGAGATGAGCTC 30987696 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || |||||| |||| ||| |||| | | || || || | | ||| Sbjct 30987695 CATCCAGTCGAAGGGATTGGTCACGTTGTACATCTTCTTG-CAC-CCGAGCGCCATGAGC 30987638 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || || ||| | || ||||| | |||||| ||||||||| | ||| Sbjct 30987637 AGGCGGTCGGCCACGAATTCAATGTACTGGCTCATGAGATCCCCGTTCATGCCGACGAGC 30987578 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | || || | || | || ||||| ||| || | || || || | || ||| Sbjct 30987577 GCGACAGGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACAGCGTCTGCGACGATC 30987518 Query 48077 T-GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || || |||||| ||| | | |||||||| || ||| | ||||| | |||||| Sbjct 30987517 TCGCGTA-CGCGGGCCTCGTCGAGCTTGTTGCGGAGAAGCTCG---TAGAGGAGGCAGGC 30987462 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 || || | ||| | ||| || || ||| ||||||| ||||||||||| ||| || || Sbjct 30987461 GAAATCACAGTGGAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 30987402 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| ||| | || ||||||||||| || || ||| || || |||||||| ||||| Sbjct 30987401 CATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGACCCCGAGAAGAATATGCC 30987342 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCC 48314 ||| || ||||| || || | ||| | |||||| | | | | ||||| Sbjct 30987341 CTCGACGCAGGCGAAGGCAACGATGCGCTC----AGCGAAGCGCTCCCCGCCGTCGATCC 30987286 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA-- 48372 || | |||||||| ||||| | || |||| || || ||||| ||||| Sbjct 30987285 AGCGCATGGCCCAGTCAGCCTTGCGCCGGACCGCGGGCACGGTGTCGATGGCGCGGAACA 30987226 Query 48373 -GAGCTTCTTGCACTC-ACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 | | | ||| ||| || || ||| | ||||| ||||||| | |||||| Sbjct 30987225 GGCGGTCCTT---CTCGACGTG-GTCGCGGATGTAGGTCTCGAGCAGCAGCGAATACATC 30987170 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||||| ||||||||||||| ||||| ||| Sbjct 30987169 TCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCGCGCCTCGGCGACC 30987110 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||||| || || ||| | ||| || ||||| || || || || || ||||| Sbjct 30987109 TGCACGTCGGTCATGAAGC-GGGAAGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCAGC 30987051 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG---CATTCCA 48606 |||||||| || || || | ||| || ||||||| | ||| || | | | ||| Sbjct 30987050 GAAGAAGGCGAGCACGTGGGAGATGAAGTGCCGCTCGTCGGGGGACAGCGCCTCGTCCCA 30986991 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | | | |||| ||||| || || ||| | ||||||||||| || | || || Sbjct 30986990 GTGCCGGGCGTCGGCAGAGAGGTCAACCTCCTCCGCCGTCCAGAAGGAGGCCACCGCCTT 30986931 Query 48667 TTTGTACATGCCCCATATGTCCGG 48690 ||||| | |||| || | ||| Sbjct 30986930 CTTGTAGAACTCCCAGATCTGCGG 30986907 >seq2 Length=244442276 Score = 206 bits (228), Expect = 5e-48 Identities = 573/865 (66%), Gaps = 23/865 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || | |||||||||||||| ||||| |||| || || ||| ||| Sbjct 34131432 CTGGTACTCCCCGACGCGCTTCTCAAAGAAGTTAGTCTTGCCCTGCAGGGAAATGAGCTC 34131373 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||||| ||| |||| | | ||| | |||| | ||| Sbjct 34131372 CATCCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCCTGT--GCCCCAGCGCCATGAGC 34131315 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | |||||| || | || Sbjct 34131314 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATTCCGACCAGC 34131255 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | | ||||| ||| || | ||||| || | || ||| Sbjct 34131254 GCGACGGGGAGCGCGTCGCAAACGAACTCACGCTCGATGTCGACGGCGTCGGCAACGATC 34131195 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||||||| | | ||| || ||| | | |||| || | |||||| Sbjct 34131194 TCGCGGACGCGGGACTCATCGAGCTTGCCCCGAAGGAGGT---CATAAAGGAGGCAGGCG 34131138 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||| ||||||||| ||||||| | || ||||| ||| || ||| Sbjct 34131137 AAGTCGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCATTAGAGAAAGTGAGGCCCGGC 34131078 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 34131077 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 34131018 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || ||||| || ||| | ||| | |||| || | | | | ||||||| Sbjct 34131017 TCGACGCAGGCGAAGGCAACGAGGCGCTCGGC-AAAG-CGC-TCCCCGCCGTCGATCCAG 34130961 Query 48317 GAAAGCGCCCAGTCTGCCTT-CTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374 | |||||||| ||||| | | | | | || | || || ||||| ||||||| Sbjct 34130960 CGCATGGCCCAGTCGGCCTTGCGGCGT-ACGGCGGGGACGGTTTCGATGGCGCGGAAGAG 34130902 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | | ||| ||| ||| ||| | ||||| ||||||| | |||||||| Sbjct 34130901 GCGGTCCTT---CTC-GGTGCCATCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCT 34130846 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||| ||||| ||||| ||||| | ||||| |||| Sbjct 34130845 CCGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCGCGCGCCTCGGCGACCT 34130786 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | || || | ||| | || ||||| || || || || || || || | Sbjct 34130785 GGACATCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGA 34130726 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGC 48608 ||||||| || || || | ||| |||||||||| | ||| ||| || | |||| Sbjct 34130725 AGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGGGCCGCGTCCCAGT 34130666 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | |||| | |||||||| || || |||||||||||||||| | || || | Sbjct 34130665 GGCGCGCGTCCGCGGAGAGGTCCACCTCCTCGGCAGTCCAGAAGGACGCCACCGCCTTCT 34130606 Query 48669 TGTACATGCCCCATATGTCCGGATA 48693 |||| | |||| || | ||| || Sbjct 34130605 TGTAGAACTCCCAAATCTGCGGGTA 34130581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529691009280