Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 185 2e-41 seq6 170 4e-37 seq2 152 1e-31 >seq9 Length=159769782 Score = 185 bits (204), Expect = 2e-41 Identities = 564/861 (66%), Gaps = 35/861 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| |||||| || || ||| |||| || Sbjct 30986913 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACGGCGGAGGAGGTTGACCTC 30986972 Query 25537 GCCAAGGACATGGACGGC--TGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | ||| | |||| ||| ||| | || ||| ||||||| ||| || || Sbjct 30986973 TCTGCCGAC--GCCCGGCACTGGGACGAGGCGCTGTCCCCCGACGAGCGGCACTTCATCT 30987030 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || ||||| || || || ||| |||||| || Sbjct 30987031 CCCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTGCTCGAGAACCTCGCTTCCC 30987090 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | || |||||| || ||||| | |||||||| |||||||| |||| Sbjct 30987091 GCTTCATGACCGACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCA 30987150 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCG 25771 |||| || | ||||| ||| ||||| | ||| || ||| ||||| ||| || Sbjct 30987151 TCGAGAACATCCACTCGGAGATGTATTCGCTGCTGCTCGAGACCTACATCCGCGACCACG 30987210 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 ||||| || || ||||| | |||||||| | | ||| || | | ||||| Sbjct 30987211 TCGAGAAGGACCGCCTGTTCCGCGCCATCGACACCGTGCCCGCGGTCCGGCGCAAGGCTG 30987270 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||||||| |||||| || || | |||||| || | ||||| | || ||| Sbjct 30987271 ACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCGCT----GAGCGCATCGTTGCC 30987326 Query 25891 TTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 || || ||| || |||||||| || ||| || || || |||| ||||||||||||||| Sbjct 30987327 TTCGCCTGC-GTCGAGGGCATATTCTTCTCGGGGTCCTTCTGCG-CCATCTTCTGGCTCA 30987384 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || ||| |||||| || || ||| ||||||||||||||| | | || |||| Sbjct 30987385 AGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGATGAGG 30987444 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTC 26066 | |||||| | ||||| |||||||| |||| ||| || | |||| || || || Sbjct 30987445 GCCTCCACTGTGATTTCGCCTGCCTCCTCT--ACGAGC----TTCTCCGCAACAAGCTCG 30987498 Query 26067 TCAAGAGACCGTCTAC---AGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123 | || | ||| ||| || ||| || ||| ||||| || |||||| ||||| Sbjct 30987499 ACGAG-GCCCGCGTACGCGAG-ATCGTCGCAGACGCTGTCGACATCGAGCGCGAGTTCGT 30987556 Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183 | ||||||||| ||||||||||| ||||| Sbjct 30987557 CTGCGACGCCCTCCCTGTCGCGCTCGTCGGCATGAACGGGGATCTCATGAGCCAGTACAT 30987616 Query 26184 TGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTAC 26240 ||| | |||||||||| ||||| || | ||| || || ||| | |||| Sbjct 30987617 TGAATTCGTGGCCGACCGCCTGCTCATGGC-GCTCGG--GTGCAAGAAGATGTACAACGT 30987673 Query 26241 GCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 | | || || ||||||| ||||| ||| ||| || ||||||||||||||||| || Sbjct 30987674 GACCAATCCCTTCGACTGGATGGAGCTCATCTCGCTGATGGGGAAGACCAACTTCTTCGA 30987733 Query 26301 AAAGAGGGTCGGCGACTATCA 26321 ||| | || || ||||| || Sbjct 30987734 GAAGCGCGTGGGTGACTACCA 30987754 >seq6 Length=174033170 Score = 170 bits (188), Expect = 4e-37 Identities = 389/573 (68%), Gaps = 18/573 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| ||||| ||| |||| || Sbjct 122042613 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTTGACCTC 122042672 Query 25537 GCCAAGGACATGGACGGC--TGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | ||| | |||| ||| ||| | || ||| ||||||| || || || Sbjct 122042673 TCTGCCGAC--GCCCGGCACTGGGACGAGGCGCTGTCCCCCGACGAGCGCCACTTCATCT 122042730 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || ||||| || || || ||| |||||| || ||| Sbjct 122042731 CTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTC-GCGTCC 122042789 Query 25652 -GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| || |||||| || ||||| | |||||||| |||||||| ||| Sbjct 122042790 CGCTTCATGTCCGACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCC 122042849 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 ||||| || | ||||| ||| |||| | ||| || ||| ||||| |||| | Sbjct 122042850 ATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGAC 122042909 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | ||||| || || || || | |||||||| | ||| || | | |||||| Sbjct 122042910 GTCGAGAAGGACCGCCTCTTCCGCGCCATCGATACGGTGCCCGCGGTCCGGCGCAAGGCG 122042969 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||||||| |||||| || || | |||||| || |||||| || || || Sbjct 122042970 GACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCCTCGTTGC 122043025 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 ||| || ||| || ||||||||||| ||| || || || ||| |||||||| ||||| Sbjct 122043026 CTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTTTGGCTG 122043083 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| || || ||| ||||||||||||||| | | |||||| Sbjct 122043084 AAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 122043143 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || || ||| | ||||| |||||||| |||||| Sbjct 122043144 GGCCTGCACTGCGATTTCGCCTGCCTCCTCTAC 122043176 >seq2 Length=244442276 Score = 152 bits (168), Expect = 1e-31 Identities = 384/571 (67%), Gaps = 16/571 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| ||||| ||| | || || Sbjct 34130590 ATTTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACTGCCGAGGAGGTGGACCTC 34130649 Query 25537 GCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || |||| | | |||| || || || ||| ||||||| || || || Sbjct 34130650 TCCGCGGACGCGCGCCACTGGGACGCGGCCCTCTCCCCCGACGAGCGCCACTTCATCTCC 34130709 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | | Sbjct 34130710 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGC 34130769 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || || ||| || ||||| | | ||| ||||| ||||| || ||||| Sbjct 34130770 TTCATGTCCGATGTCCAGGTCGCCGAGGCGCGCGCCTTT-TACGGCTTCCAAATCGCCAT 34130828 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 ||| || | ||||| ||| |||| | ||| || ||| ||||| || | | | Sbjct 34130829 CGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGATGGCAC 34130888 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| || || || || | |||||||| | | ||| | | | ||||| Sbjct 34130889 CGAGAAGGACCGCCTCTTCCGCGCCATCGAAACCGTCCCCGCCGTACGCCGCAAGGCCGA 34130948 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||| || || |||||| |||| |||||| || || |||| Sbjct 34130949 CTGGGCCATGCGCTGGATCGACGGCGGGGAGCGC----TTTGCCGAGCGCCTCGTTGCCT 34131004 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | | |||| || ||||||||||| ||| || || || ||| ||||||||||||||||| Sbjct 34131005 TCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTCTGGCTCAA 34131062 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGG 26008 | || || |||| |||||| ||||| || || ||||||||| | ||||||||| Sbjct 34131063 GAAGCGCGGCCTCATG-CCGGGCCTCACTTTCTCTAATGAGCTCATCTCCCGGGACGAGG 34131121 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 | |||||| | || || |||||||| || || Sbjct 34131122 GCCTCCACTGCGACTTCGCCTGCCTCCTTTA 34131152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841699980480