Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 114 8e-20 seq82 109 4e-18 seq10 109 4e-18 seq3 104 2e-16 seq2 95.1 8e-14 >seq5 Length=223902240 Score = 114 bits (126), Expect = 8e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| Sbjct 22203284 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCA 22203343 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| ||||| | | || || |||||||| ||||||||||| || Sbjct 22203344 GGCCGCATTGCTGGCCTTGATGTTGAAAGGATCATCAATGAACCTACAGCAGCCGCTCTG 22203403 Query 474857 GCTTATGG 474864 ||||||| Sbjct 22203404 TCTTATGG 22203411 >seq82 Length=83778 Score = 109 bits (120), Expect = 4e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| Sbjct 72526 GCAGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACAAAGGATGCT 72467 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| ||||| | | || || |||||||| |||||||| || || Sbjct 72466 GGTCGCATTGCTGGCCTTGATGTTGAAAGGATCATCAATGAACCTACAGCAGCTGCTCTG 72407 Query 474857 GCTTATGG 474864 ||||||| Sbjct 72406 TCTTATGG 72399 >seq10 Length=150982314 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||| || |||||||| || |||||||| ||| | ||||||||||||||| Sbjct 22240497 GCAGTGGTTACAGTCCCAGCATACTTCAATGATTCACAAAGGACAGCAACTAAAGATGCT 22240556 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||||||||||||||| || || | | Sbjct 22240557 GGCCGCATTGCAGGACTGGAAGTTCTCCGTATTATTAATGAACCAACTGCTGCATCGTTG 22240616 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||| | || ||||| Sbjct 22240617 GCCTATGGTTTCGAGAAGAA 22240636 Score = 93.3 bits (102), Expect = 3e-13 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 |||||||||| | || ||| ||||| | |||| || || |||||| | ||||| Sbjct 79178875 TCAATATTATATGGAGTGACAGTTTCAGGATATGTCAGGTTCAAAGCAATACTCCATGGT 79178816 Query 321804 AAACCAACTTCATTCAGTGCA-ATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | || | ||||| || || || || ||||| | ||||||||||||||| | || | Sbjct 79178815 ACTCCCAATTCAT-CAATGTTTATGTTCGGATCTGGTGTGATAACTGTACGGGCCGAGAA 79178757 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTT 321907 ||||||||| || ||||| | ||||||||||| | |||||||| Sbjct 79178756 ATCAACACGCTTGCCCATCAAGTTTCCTCTAATCCTGCCTTCTTT 79178712 >seq3 Length=235667834 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||| || |||||||| || |||||||| ||| | ||||||||||||||| Sbjct 98751439 GCAGTGGTTACAGTACCAGCATACTTCAATGATTCACAAAGGACAGCAACTAAAGATGCT 98751498 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||| ||||||||||| || || || | Sbjct 98751499 GGCCGCATTGCAGGACTGGAAGTTCTCCGTATTATAAATGAACCAACTGCTGCATCATTG 98751558 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || ||||| | || ||||| Sbjct 98751559 GCCTATGGGTTCGAGAAGAA 98751578 >seq2 Length=244442276 Score = 95.1 bits (104), Expect = 8e-14 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTA 474746 || ||||| |||| || ||| | || ||||| ||||| ||| || | || || |||| Sbjct 195895132 AAGATGAAGGAAACTGCAGAGG-CTTACCTTGG-CAAGACAGTCTCTAAGGCTGTTATTA 195895075 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 |||| ||||| |||||||||||| ||||||| || || || || ||||| || || |||| Sbjct 195895074 CTGTCCCAGCTTATTTTAATGATGCTCAACGCCAGGCTACCAAGGATGCTGGTAGGATTG 195895015 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | || || | ||| | | ||||| ||||| || || || || || | ||||||| Sbjct 195895014 CTGGACTGGAAGTTATGAGGATTATCAATGAGCCCACTGCTGCAGCTTTGTCTTATGG 195894957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268167747074516