Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 145 9e-30 seq2 123 3e-23 seq9 105 8e-18 >seq6 Length=174033170 Score = 145 bits (160), Expect = 9e-30 Identities = 250/362 (69%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | |||||||| |||||| | ||||| | || | || |||||||||||| Sbjct 86008793 GAGGTCGTGGATTTCCTCAAGAACCCCGACAAGTACACCGCGCTCGGAGCCAAGATCCCC 86008852 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || || |||| || ||| || || || ||||||||||| || || ||| || Sbjct 86008853 AAGGGTTGTCTCCTCGTCGGCCCGCCTGGGACCGGGAAGACCCTCCTTGCGCGTGCCGTC 86008912 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || || || | || || ||| || ||| ||||| | | || || ||| | || Sbjct 86008913 GCTGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCTGCCTCTGAGTTCGTCGAGCTCTTC 86008972 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 || ||||| |||||| ||||| ||||| ||||| || | ||| | || || Sbjct 86008973 GTCGGTGTCGGTGCCTCCAGGGTGCGCGACCTCTTCGAGAAGGCCAAGGCCAAGGCGCCC 86009032 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGT 175527 || |||||||||||||||||||||||||| || || | ||| ||| | || || |||| Sbjct 86009033 TGCATTGTCTTCATTGATGAGATTGATGCCGTTGGAAGGCAGCGCGGTGCCGGACTTGGT 86009092 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | | |||||||||||||| || || ||||| || || | || |||||||||||| Sbjct 86009093 GGG---GGTAATGACGAGAGAGAGCAGACCATTAACCAGCTCTTGACGGAGATGGATGGC 86009149 Query 175588 TT 175589 || Sbjct 86009150 TT 86009151 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| |||| || || || || ||||| ||||||||||| || || || Sbjct 122043005 CTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 122043064 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | |||| |||||||||| || |||||||| ||||| |||||| || || Sbjct 122043065 CTGCGCCATCTTTTGGCTGAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 122043124 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 122043125 GCTCATCTCCCGCGACGAGGGCCTGCAC 122043152 Score = 116 bits (128), Expect = 4e-21 Identities = 195/282 (69%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| || || || ||||| || || || | | ||| Sbjct 95645870 TTTGTGGAGATGTTTGTTGGTGTTGGAGCTTCCAGAGTTCGTGACCTTTTCAAGAAGGCC 95645811 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 95645810 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGA 95645751 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||||||||| || Sbjct 95645750 GGTACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTCTCAATCAACTACTAACT 95645691 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| || || | ||||| ||| | |||||||| |||||||| || | Sbjct 95645690 GAGATGGATGGTTTCGAGGGCAACACTGGAATTATTGTTATTGCTGCCACTAACCGGGCT 95645631 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 || || | ||| ||| | ||| | || || ||||||||| Sbjct 95645630 GACATATTGGATTCCGCTTTACTTAGACCTGGGCGTTTTGAT 95645589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| ||||||| || |||| | || |||| || ||| | ||| | || Sbjct 84116149 TACTTTGGCTTCAAAACTCTGGAGAGGTCTTACCTCTTGAA--GCTTGGTGGGAAGGTCG 84116092 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | |||| || ||| ||||| | ||| |||| || | || || ||| ||||||||||| Sbjct 84116091 TTGAAAGGCCTCAGCACATGCTGATGAGGGTTTCAGTGGGAATACACAAGGAAGACATTG 84116032 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | |||| | | ||| ||| | ||||||||| | ||| | || ||| |||||| Sbjct 84116031 AGTCTGCCATTAGGACGTACCATCTGATGTCCCAGCGCTGGTTTACACATGCATCACCAA 84115972 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | || ||||| ||||| ||||| || || || Sbjct 84115971 CACTTTTCAACGCTGGCACACCGAGGCCCCA 84115941 >seq2 Length=244442276 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||| ||||||||||| |||| || || || || ||||| ||||||||||| || || || Sbjct 34130982 CTTTGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 34131041 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| ||||| ||||| Sbjct 34131042 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACTTTCTCTAATGA 34131101 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 34131102 GCTCATCTCCCGGGACGAGGGCCTCCAC 34131129 >seq9 Length=159769782 Score = 105 bits (116), Expect = 8e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| ||||| || || || || || || | | ||| Sbjct 113594264 TTTGTGGAGATGTTTGTTGGTGTTGGTGCTTCCAGAGTACGTGACCTTTTCAAGAAGGCC 113594205 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || || || || || || || | ||||| |||||||| || || | |||| | Sbjct 113594204 AAGGAGAACGCTCCTTGCATAGTGTTTGTCGATGAAATTGATGCTGTTGGAAGGCAAAGA 113594145 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||||||||| || Sbjct 113594144 GGTACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTCTAAATCAACTACTAACT 113594085 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | || || ||| | |||||||| |||||||| || | Sbjct 113594084 GAGATGGATGGTTTTGAGGGCAACACCGGAATTATTGTTATTGCTGCCACTAACCGAGCT 113594025 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | ||| ||| | ||| | || || || ||||| Sbjct 113594024 GACATCTTGGATTCCGCTTTACTTAGACCTGGGCGCTTTGA 113593984 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| ||||||| || |||| | || || | || ||| ||||| | || Sbjct 15725009 TACTTTGGCTTCAAAACTCTGGAGAGGTCTTACCTGTTGAA--GCTTGATGGTAAGGTCG 15725066 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | |||| || ||| ||||||| ||| |||| || | || || ||| ||||||||| | Sbjct 15725067 TTGAAAGGCCGCAGCACATGTTAATGAGGGTTTCACTGGGGATACACAAGGAAGACATCG 15725126 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | |||| | | ||| ||| | ||||||||| | ||| | ||| || |||| | Sbjct 15725127 AGTCTGCCATCAGGACGTACCATCTGATGTCCCAGCGCTGGTTTACTCATGCTTCACCGA 15725186 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | || ||||||||||| || || || || || Sbjct 15725187 CGCTTTTCAATGCTGGCACGCCGAGGCCCCA 15725217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567608948960